Query= MSMg01no102_m09.b1 MSMg01no102_m09.b1 CHROMAT_FILE:
MSMg01no102_m09.b1 PHD_FILE: MSMg01no102_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:28 2005
(530 letters)
>mm_chr17_43583506_43584435
Length = 930
Score = 888 bits (459), Expect = 0.0
Identities = 477/483 (98%), Gaps = 1/483 (0%)
Strand = Plus / Minus
Query: 4 gaattcacttgggtgtccaccgttgagagcaagtcaaggatgctgatgatggctcccagg 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gaattcacttgggtgggaaccgttgagagcaagtcaaggatgctgatgatggctcccagg 424
Query: 64 cttcctggagatgagcggatgtcctgttcttccttcccagcactaacagaaaggtccctc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cttcctggagatgagcggatgtcctgttcttccttcccagcactaacagaaaggtccctc 364
Query: 124 aggtatgtagggagcttctggtcctgggtggggctcttgatcaaagcctagtttaaaata 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aggtatgtagggagcttctggtcctgggtggggctcttgatcaaagcctagtttaaaata 304
Query: 184 aagcaaaaaaacaaatgaaattattccaataatctggaagctgtggttttcctttattct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aagcaaaaaaacaaatgaaattattccaataatctggaagctgtggttttcctttattct 244
Query: 244 caatgcctacatctgctgtggatttcatggtcaaatgtaagtttgtttttttgtttgttt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 caatgcctacatctgctgtggatttcatggtcaaatgtaagtttgtttttttgtttgttt 184
Query: 304 gtttgttttg-tttttttacaacaatttcaggttttatttttgaaatgattaatcctgat 362
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gtttgttttgttttttttacaacaatttcaggttttatttttgaaatgattaatcctgat 124
Query: 363 tgtcaactttctgagttttagaatcatcactgaatctaacttggggcatatcgaagaggg 422
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 123 tgtcaactttctgagttttagaatcatcaccgaatctaacttggggcatattgaagaggg 64
Query: 423 agttgtttctaggctgagttcattgaagtgggacgagccactctaaatatggctggtacc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 agttgtttctaggctgagttcattgaagtgggacgagccactctaaatatggctggtacc 4
Query: 483 att 485
|||
Sbjct: 3 att 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no102_m09.g1 MSMg01no102_m09.g1 CHROMAT_FILE:
MSMg01no102_m09.g1 PHD_FILE: MSMg01no102_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:28 2005
(329 letters)
>mm_chr17_43461358_43462087
Length = 730
Score = 576 bits (298), Expect = e-169
Identities = 322/330 (97%), Gaps = 1/330 (0%)
Strand = Plus / Plus
Query: 1 agcataaggaaggagtatgcaaattcccctgggaggtgac-tatacatccagtgtcttga 59
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 201 agcataaggaaggagtatgcaaattcccctgggaggtgacatatacatacagtgtcttga 260
Query: 60 tgataatggtggtttggctatgtatgcactaatcaaaacatgttgcatattacaggcaat 119
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 tgataatggtggcttggctatgtatgcactaatcaaaacatgttgcatattataggcaat 320
Query: 120 taatatgttgattttattgtcaatgggattttctttttaaggcaaaaaggtgaagtagat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatatgttgattttattgtcaatgggattttctttttaaggcaaaaaggtgaagtagat 380
Query: 180 aaaggacagaataatgcagttggttcaatctcaattaagaaacaagcatgggctgcctac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaggacagaataatgcagttggttcaatctcaattaagaaacaagcatgggctgcctac 440
Query: 240 cccctatgtctcagtggttaaaaacaccaactaccaagcctgaggacctgagttctattc 299
|||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 ccccaatggcccagtggttaaaaacaccaactaccaagcctgaggacctgagttctatac 500
Query: 300 ccaggacccacatgatggaaaaatggaact 329
||||||||||||||||||||||||||||||
Sbjct: 501 ccaggacccacatgatggaaaaatggaact 530
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 730
Length adjustment: 9
Effective length of query: 320
Effective length of database: 721
Effective search space: 230720
Effective search space used: 230720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
