BAC Information

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BAC

Clone NameMSMg01-103K17
Chromosome17 (Build37)
Map Location 52,924,077 - 52,924,318
singlet/doubletsinglet
Overlap genenone
Upstream geneSatb1, EG628919, LOC672987, EG328839
Downstream geneKcnh8, LOC668506, EG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103K17.T7 (MSMg01no103_k17.b1)MSMg01-103K17.TJ (MSMg01no103_k17.g1)
ACCAG318479AG318480
length727728
length of high quality
(start - end)
645 (47 - 691)245 (69 - 313)
definitionCHROMAT_FILE: MSMg01no103_k17.b1 PHD_FILE: MSMg01no103_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:40 2005CHROMAT_FILE: MSMg01no103_k17.g1 PHD_FILE: MSMg01no103_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATTTGCGGCGCTATACGACTCCTATAGTCAGAGATCCGCGGAATCACG
TCTGATTACATCGAATGGCTGAGAAGCACCTAAAGAAATGTTCAAAGTCC
TTAGTGATCAGAGAAATTCAAATCAAAACACCCCTGAGATTCCACCTTAC
ACCAATCAAAATGGCTAAGATCAAAACCTCATGTTGACGAGGATGTGGAG
AAAGAGGAACACTCCTTCATTGCTGGTGGGATTGCAAACTCGTACAACTA
CTCTGGAAATCAATCTGGAGGTTCCTCAGAAGATTGGAAATAGATCTACC
TGAAGACCCAGCAATACCACTCTTGGAAATATACCCAAAAGATTTCCCAC
CATGCCAAAAGGGGCATGTGTTACACTATATTCATAGTGGACTTATTTGT
GATTGTCAGAAGCTAGAAACAACCTAGATGTCCCATGACAGAAAAATGGA
TATAGAAAATGTGGTTCATTTACACAATGGAATACTACTCAGCTATTAAG
AATGAGGACATCCTGACTTTTACAGGCAAATGGATGAAACTAGAAAATAT
CATCCTGAGTGAAGTAACTCAGAGCTAACAGGATGTGCATGGTATGTACT
CACTAATAAGTGGATATTACCTTACCCCCACAAAAAAGTACAGAATACCC
CAGATACAGACTACAGAGTTCACAAAGGTCAACAAGCTGAAGGAGGGAGG
TAGGTAGCAACCCATCTTTCTCTCTTC
GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACGTGAGTTTCTTTTTGAAGTAGCCATGGT
TTAGTAATAGTAAAATGAAACCGTAGGAGTCCACTTCAGAGATGACACTT
GGTGGAGGGGTGCATAAGGCAGAAAGACTTTACTCTTTGGCATGCAGAGC
TGTGTGACTGGCTCTGGTACTGGGACTTGGTGCTTTGACAGGTCTTTCTG
TCACATGACTCAGCTTAACTGACTGATCTCTACCTAACTGTCAATGTTCA
CCCTAACTGATTTTTTGCTATAAATGCTGGAAATGGGCCTTCCCAGAGCA
GCAGGTCAAGGTGAGCCACTGCAGCAGGGAGAAGCTTGTAAAAGCCACAA
GTTATATCACTTGTCTAGTCACATATGTACATACAACCACCAATGTGTCA
TTAATAAATGAGAATTATCTTAGCCTCAATCTAATAATGTATGTATATAT
ATATATATATATATATATATGCATGTGCGCATGTATTTTTCTTAAACTTT
GCTTGTATGAACACAGATTTTTTCATCAAAATTTCACCATTTCTATAATA
TTTCCTGAATTCTGATTTAGCTCGCATTATGAAGAAACTCCTTACTAAGA
TAGAAACCTTGGAAGGCTGATACTATCATGCCATCCCTGTAACCTTTTAA
ATCTTCATGGAAATTAGGAAAAATGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_k17.g1 MSMg01no103_k17.g1 CHROMAT_FILE:
MSMg01no103_k17.g1 PHD_FILE: MSMg01no103_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:40 2005
         (245 letters)



>mm_chr17_52923877_52924521
          Length = 645

 Score =  445 bits (230), Expect = e-129
 Identities = 239/242 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacgtgagtttctttttgaagtagccatggtttagtaatagtaaaatgaaaccgtagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacgtgagtttctttttgaagtagccatggtttagtaatagtaaaatgaaaccgtagga 260

                                                                       
Query: 61  gtccacttcagagatgacacttggtggaggggtgcataaggcagaaagactttactcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtccacttcagagatgacacttggtggaggggtgcataaggcagaaagactttactcttt 320

                                                                       
Query: 121 ggcatgcagagctgtgtgactggctctggtactgggacttggtgctttgacaggtctttc 180
           ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 321 ggcatgcagagctgtgtgactggctctggtagtgggacttggtgctttgagaggtctttc 380

                                                                       
Query: 181 tgtcacatgactcagcttaactgactgatctctacctaactgtcaatgttcaccctaact 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcacatgactcagcttaactgactgctctctacctaactgtcaatgttcaccctaact 440

             
Query: 241 ga 242
           ||
Sbjct: 441 ga 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)