BAC Information

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BAC

Clone NameMSMg01-104A01
Chromosome17 (Build37)
Map Location 64,537,410 - 64,537,583
singlet/doubletsinglet
Overlap geneLOC669778
Upstream geneFbxl17, Ppia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik, Fert2
Downstream genePja2, LOC100043582, Man2a1, 4930583I09Rik, LOC100043871
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104A01.T7 (MSMg01no104_a01.b1)MSMg01-104A01.TJ (MSMg01no104_a01.g1)
ACCAG318727AG318728
length723721
length of high quality
(start - end)
177 (83 - 259)555 (73 - 627)
definitionCHROMAT_FILE: MSMg01no104_a01.b1 PHD_FILE: MSMg01no104_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:06 2005CHROMAT_FILE: MSMg01no104_a01.g1 PHD_FILE: MSMg01no104_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATGACAACCCCCCCCCCCNNNNNCCATAATACNNNCCTCTATAAXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAGATCCGCGGAATTCAAAGAGGA
AATAGCGGACTCAGAGTCAAGTATTCAAGTCTGAGTCGGTCCCCCAGCAG
ACAGGGGGACTTGATTGGAACCCTCTACAGCATTGACAAGCTATTGCATA
CAACAGAGGCCATTGCATGTGAGCTGTCTTGAAAGTGGTTCCCCCTCCCC
ACCCCCACACCCCTTTGGGTTTTGTTCAGATTTATTTCAGGGGAACTAGA
AAAGATGAGGGACCACGAATTCCTAGTGGTAATTGTATGGGGATACAAGG
GTCAAAGGTTTAAAAAAAAAAAAAAGTAAAAAAATGGCGGGTAACCTTGC
TTCTTGGTGGAAAAAAATGCATGTTTCCCAGCTTAAAAAACCCTGGGGCA
AAGGTTCCAAAAGGCCCCTAAATTTAAAACCCCCCCCAAAGGCAAAGGGT
GCGGGGAAAGGCCCCTCTAAAAGCAAAAAATCTTGGGGGGAAAATTCGGG
GAACGCTTTTTGTGAAAACCAAGGGGTTAAATAAAATCCCCGGGAACAAA
AAATTCTCAATATGCGGGTAACAACCTTTTTGGGGAAAAACAAAAACACA
CTCCCCGTTTTTTTCCCTTTTTTCGCCCCCCCGGGTTATAAAATACCCCC
CCCCGCCCCCCCCCCCCTCTTTC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTAGTTTTTCTTATCTAACAATGTCC
TTAACTCTTGGATTTGCTGAGTTGACAAATGTACCTGTTAATATGTTGAT
AGAGAAAATATGGAGGCTGTGAGTCAATTTAAGAACTTAACAATATATTA
ATTTATAAAATATTCCCAACAAATTAAAGATGTCTTCTTTCTGCCATCAT
TTGTTTTGAGAAATCTACAATCTTTTGAAACATTTTCATTTGATGTTATT
GTCCCTGTTGACTTTTAAGATTTTTAAATATTTCCCATAGATTTTGGTGC
TTAAGGATATGTTTAGGTATTTGTTTGATGTTTATCTGGAATTCACAAAG
GTTTTATGTGTGAGTGTGTGTGTGTGTTTCCTTTTAGTGATTTGCTGCCT
CTGAATTTACACTCTTTCTGGTCTCCAAAGATCAGAATTTTGGGAAGAGG
AGGGTATAATAAATATATCCTATTAACAGCTGAGCATTCTACAATCTTGT
TTTTGGTTATTTTATAAATTATAGGTATGTTGTCATTTTAAGGGATAATT
TACAAATAATTATAGTTTTGGACAGTGAGGACACTAATGAGAGCTTAGAC
TCAGGAATTTTTATCTTTCCTTCCCTCTTCTCTATCCTTCTTTCTTAGGA
AACACGAAGGGAGTTGAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_a01.b1 MSMg01no104_a01.b1 CHROMAT_FILE:
MSMg01no104_a01.b1 PHD_FILE: MSMg01no104_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:06 2005
         (177 letters)



>mm_chr17_64537206_64537783
          Length = 578

 Score =  290 bits (150), Expect = 3e-83
 Identities = 168/174 (96%), Gaps = 1/174 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaatt-caaagaggaaatagcggactcagagtcaagtattcaagtctgagtcggtccccc 63
           ||||| ||||||||||| || ||||||| || ||||||||||||||||||||||||||||
Sbjct: 378 gaattccaaagaggaaagagtggactcataggcaagtattcaagtctgagtcggtccccc 319

                                                                       
Query: 64  agcagacagggggacttgattggaaccctctacagcattgacaagctattgcatacaaca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agcagacagggggacttgattggaaccctctacagcattgacaagctattgcatacaaca 259

                                                                 
Query: 124 gaggccattgcatgtgagctgtcttgaaagtggttccccctccccacccccaca 177
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 258 gaggccattgcatgtgagctgtcttgaaagtggttccccctgcccacccccaca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 578
Length adjustment: 8
Effective length of query: 169
Effective length of database: 570
Effective search space:    96330
Effective search space used:    96330
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)