BAC Information

Click to search

BAC

Clone NameMSMg01-104K17
Chromosome17 (Build37)
Map Location 15,639,462 - 15,639,795
singlet/doubletsinglet
Overlap geneTbp
Upstream geneThbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1
Downstream genePdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3, LOC100041383, LOC100041394
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104K17.T7 (MSMg01no104_k17.b1)MSMg01-104K17.TJ (MSMg01no104_k17.g1)
ACCAG319222AG319223
length708730
length of high quality
(start - end)
34 (251 - 284)334 (75 - 408)
definitionCHROMAT_FILE: MSMg01no104_k17.b1 PHD_FILE: MSMg01no104_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:00 2005CHROMAT_FILE: MSMg01no104_k17.g1 PHD_FILE: MSMg01no104_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGG
AATTCTATTGTGTATTCCATACAATATTTTTCATTGTCTATCCATTAGTT
GATGGATATCCATTTATGCTGATTTGATTCCTTAGCTATTATGACTAGAT
CATGAATACATGGTGTGATGGCTTGTATATGCTTGTACCAAGAATTGACA
CTGTTACGAGGTGTGGCTCTGTTGCAGTTGTTGTGTCACTGAGGGTGTGG
GCTTTAAACCCTCACCCTAGCTGCCTGGAAGCCAGTACTCTGCCAGCACC
CTTCAGATGAATATATAGAACTCTCATCTCTGCCTGAACCATGCCTGCCT
AAATGCTGACATGTTCTCCCCTTTATGATCATGGACTGAATCTCTGACCT
TGCACGTCTGCCTCCATTACATCTTGTCCTCTATAATACTTGCCTTGGTC
ATGGCGTCTGTTCACAGTATTAATTTACTAATACCCCTGGCTACGCCCGT
TTCACTTGTCCCACGATATGGAACCCTTTGCCCTATCCTCACATTAACCA
TACCTGCCCGAACTCGATTTTCTACTTCCGTCTTTTTCGACATCCCCTTA
TACTCATTTCTCTTTCGTTCCCTCTATCCTACATGTTAACACACTACCTC
TCTCTTGCATGTCCCGTCACCTTATTATTATATTAATACATGTGTTTTTT
CGCTTTGG
GTATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCGGAAGGCACCAAGGCATGAAAGT
GATGTACAGGCATATATGTAGACAAAATACACATATAAAATGAATTACAT
TTATGTGAGGAATTGGCTGTGAGAGTTTGTTCTCTCCTTTCACCATTTGG
ATAAATGCACAATATTAGGATTTGCAGCAAACGCCTTTGCCTGATGCACC
GTTTCTTGCCAGCCCTTTCTCCAATAGTTTTTATTACTGGTCTTGACACC
TTAATTTTCAGTACTATTAGAATATTTAAGCACACATCAACAAAGTTTTT
GTCTTTGTTGGTGATTTTACATGAGTCACAGGAAACATGGACTAGGCTTT
GAGAGTAAAAGATACATATATTCATATGTTTGTGTGTGTGTATGTATTTA
CACACACACTCCAAAATAGTTCTGTGTTTATTTTGTGTGAACATGAAACC
TATGTCCATCTATTAAACTTAAAACATATTTTTCCAAGCAGCATCACTAT
TTCATGGTGTGTGAAGATAACCCAGAACATTGAAGACGTTTCTAAGGAGA
TATTCAGAGGATGCTCCAGGGAAGATCTGAGTACTTGCAGAAAGGGAGAA
TCTTGGAACAGAACAACAGCCTTCCCCCTTATGCTCAGGCCTTGTCCTCC
CCCCAGGTTATATAGCCAGATGTAAGCGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_k17.g1 MSMg01no104_k17.g1 CHROMAT_FILE:
MSMg01no104_k17.g1 PHD_FILE: MSMg01no104_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:00 2005
         (334 letters)



>mm_chr17_15639262_15639995
          Length = 734

 Score =  615 bits (318), Expect = e-180
 Identities = 330/334 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcggaaggcaccaaggcatgaaagtgatgtacaggcatatatgtagacaaaatacacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcggaaggcaccaaggcatgaaagtgatgtacaggcatatatgtagacaaaatacacat 260

                                                                       
Query: 61  ataaaatgaattacatttatgtgaggaattggctgtgagagtttgttctctcctttcacc 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaaatgaattacatttatgtgaagaattggctgtgagagtttgttctctcctttcacc 320

                                                                       
Query: 121 atttggataaatgcacaatattaggatttgcagcaaacgcctttgcctgatgcaccgttt 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 atttggataaatgcacaatattaggattagcagcaaacgcctttgcctgatgcaccgttt 380

                                                                       
Query: 181 cttgccagccctttctccaatagtttttattactggtcttgacaccttaattttcagtac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgccagccctttctccaatagtttttattactggtcttgacaccttaattttcagtac 440

                                                                       
Query: 241 tattagaatatttaagcacacatcaacaaagtttttgtctttgttggtgattttacatga 300
           |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 441 tattagaatatttaagcacacagcaacaaaggttttgtctttgttggtgattttacatga 500

                                             
Query: 301 gtcacaggaaacatggactaggctttgagagtaa 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcacaggaaacatggactaggctttgagagtaa 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)