BAC Information

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BAC

Clone NameMSMg01-104O15
Chromosome17 (Build37)
Map Location 15,371,764 - 15,372,005
singlet/doubletsinglet
Overlap geneC330048F19
Upstream geneSmoc2, LOC664856, Thbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3
Downstream geneLOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104O15.T7 (MSMg01no104_o15.b1)MSMg01-104O15.TJ (MSMg01no104_o15.g1)
ACCAG319406AG319407
length703736
length of high quality
(start - end)
242 (75 - 316)247 (74 - 320)
definitionCHROMAT_FILE: MSMg01no104_o15.b1 PHD_FILE: MSMg01no104_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:20 2005CHROMAT_FILE: MSMg01no104_o15.g1 PHD_FILE: MSMg01no104_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAACCGCGGA
ATTCTGCTCTTTATCTCAAGAAAGTCATCATGGAACCACCAATTCCTGAA
CCTCACTAAGTGGACACATCACCTTCCTGATTCAGCAGTGCATTCTGGCT
GAATGCTCTATAGCTTGGGGACCACATAGCTCTGCACCTGGTGGGTTGTC
CTCTCCAGGCCAACCAGTACCTGTTTAAGGATTCAAAAGTCACAAACCTC
CATGGGAAATCTGGGAAGCTGAACCCCTGGAGACACTTATGGGGTCTCTG
ACATCTGAGAATGTGGGCATGTTTCAGTGACCCAGCTTGACAAGTGAAGG
TGAATAGGATGATTATCATGCTGCCCCAGAGCTCTCTGCCTGTAAAAGAA
AGAGCATTGCACTCTGACACATGACTCAATTGAATTTATGAGGAATGCAG
TCATTCATAGCCACCATGGTGACTATCACTTACTGAGCATTCCACGCAGC
ACGTGCTAGACGCTCTGTTAGCTTTGTCACGAACATTATTATCTCTGAGC
CTTCTCAAGGACTCAATAATACATCTTGCTCCACCATGTACCTCATGTCT
CGATACACCGTGCCCCACTTCATCCTCTTTCCTACTTCTTTCTGGTTTCA
TTTTGTAGCTTACGCGATCTAAAATATTTCACTCTCTTGTCTAAAACATT
CTT
AATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAAAAAGGGATCCAGCCATAGAAGGTG
ACACAGGCCAAGGTATGAATAGGAGGAGAATTAGAGGAAAGACTTGGCAC
AGGAAATGGAGGAGAAACAAGGAGGAGGATAATGAAGAGGGACATGGAAG
ATTTGAAGGGGACATGGATGAAATTTGGAGGAGGGGCATGGAGGAATAGA
AAGAGAAGGATATGATGGGGGAGGACCAGGAAGGATGGAGGGAGATATTC
AGATGAAGATATGCAACAGACCTTGTTTAGGCTCATGCAGGCGTGTTGTT
ATGTAAACATGCCTTTGCTGACTCCCCCTACCGTAGATCATCCTTGCTTT
TGCTTCTTCCCTTCACCACCCCCGATAGTCTCACCTCCCCATGTCCTTGT
TTCTCCTCTATTACTGACTGTATATCCAGCGCGCATGCTTCTCTCACTGT
CCCTACCATCCCACGCTTATTTGTCCCCCTCTGTTTAGTGCCCTAGGTTC
ATCGGTGTTTTTACCCATTTTTTCTCCCCTTCTATTATTGTCTTCTTCAA
TTCTCGTGCCTTTCCTTTCTGTCCTCTTCTTTATTTGTCTTCCCCTCCTT
TCCGCCTCTCTTTCATATCTTTCTCTATTTATTACTACTCTCCTGTTTTT
TCCTCCCGCTTTTTTTTTGTTCTCTATCTTTTCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_o15.b1 MSMg01no104_o15.b1 CHROMAT_FILE:
MSMg01no104_o15.b1 PHD_FILE: MSMg01no104_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:20 2005
         (242 letters)



>mm_chr17_15371564_15372205
          Length = 642

 Score =  468 bits (242), Expect = e-136
 Identities = 242/242 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatcatggaaccaccaattcctgaacctcactaagtggacacatcaccttcctgattca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tcatcatggaaccaccaattcctgaacctcactaagtggacacatcaccttcctgattca 383

                                                                       
Query: 61  gcagtgcattctggctgaatgctctatagcttggggaccacatagctctgcacctggtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gcagtgcattctggctgaatgctctatagcttggggaccacatagctctgcacctggtgg 323

                                                                       
Query: 121 gttgtcctctccaggccaaccagtacctgtttaaggattcaaaagtcacaaacctccatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gttgtcctctccaggccaaccagtacctgtttaaggattcaaaagtcacaaacctccatg 263

                                                                       
Query: 181 ggaaatctgggaagctgaacccctggagacacttatggggtctctgacatctgagaatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ggaaatctgggaagctgaacccctggagacacttatggggtctctgacatctgagaatgt 203

             
Query: 241 gg 242
           ||
Sbjct: 202 gg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)