BAC Information

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BAC

Clone NameMSMg01-105D21
Chromosome17 (Build37)17 (Build37)
Map Location 35,375,292 - 35,375,53335,692,679 - 35,692,799
singlet/doubletsingletsinglet
Overlap geneAtp6v1g2
Upstream geneH2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1
Downstream geneBat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333
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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105D21.T7 (MSMg01no105_d21.b1)MSMg01-105D21.TJ (MSMg01no105_d21.g1)
ACCAG319649AG319650
length707694
length of high quality
(start - end)
242 (77 - 318)121 (69 - 189)
definitionCHROMAT_FILE: MSMg01no105_d21.b1 PHD_FILE: MSMg01no105_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:48 2005CHROMAT_FILE: MSMg01no105_d21.g1 PHD_FILE: MSMg01no105_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:49 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(35,375,292 - 35,375,533)(35,692,679 - 35,692,799)
sequence
ACATAAAATCAAAAATTGCGGCGCTAATACGACTCCTATTCCAAAGGACC
GCGGAATTCGCATATTTCAGATGACGGAGTGCCTGTATCATGACCGCACT
CTGCGTGCCTGCCAGAATTCTAACCCCCTCTCCTGACTTTTTTATTCCTT
GTGTTCCAGCTTTGTTCAGCCACTGTGACACTAATAACCCTCTAAAGAAT
TTGTTTCTCTGGCTCTCCCTTGGCACATCATGCCCCCGAACAGTTAAATG
ATAATGTTATTTAGCCCCTCTGTCCGAGTCCCAAATATATATCAAATCTC
TTAGCACCTCTCTGTTTCTCCCGATTTGTTCTTTCTCATGGTAGGCCCCC
CTCTTTCTCTGTTTTCCCAAATCTTGCTGCTTCCGGTAGCTGAAGATATC
TATGACATTCACATGCATGCTTTCCTTTGTGTGTCATCAGTACCTTGTCT
CCTTGCGTAACAGCGGAGTGCCAATATAATAATGCTGTATGAGTCTATTG
CTGCCTATATCACCCTCCTCTTTGCCTCGCCCGTGGTCATTTTGTTTTGC
TGTTTTCACAGTTATGCCCTTATCCCGCCCCTCCCAACCCTGCTTGACCC
CGTCTTGCAAGCTCTATGTCCAATTCATAGCACTAAGCTCTGCGATCACC
ACTCGAACCTAAGGTTGCCCTTCCTAGAATTACGTAAACTTCCGCCAGAA
CCACTCT
CATGCTAGGGGAGGCTGGCGGCGCCTGTTCCAAACAGGXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCGTACCCGAGCAAGGGCCCTTATAGCTGACA
GAGCCAGTGTCACAGGGCTGAACCCCGCCAGAGCCCACGGGCTGGAACGT
AACGCCCACTGGGTAGCCACTGGAACTGGAAGAGCCACGGCTGGGGATGA
TGGGGTTGCTAGAGAAGTACTTGCCCTCAGAGACTGGCCGCCCAGCTGCA
AAGGAGGGGGCCCCTGGTGAGCCCCTGATAGGGTTGCCCTTGGTGAAGTA
GCCCACGGGGTATATTTTACCCCCACTGTAGGTCATGCCTGGGACTAGAT
AACTGTTGGCAGAGCCACCCACCACCTTATAGCCGCCATAGGGCTTCTGG
ACAGAGGTGATGGGAGGGCAGGTCTTACCTGCGGGGCCTCCATTGTTACT
GGCCATGCCCTGAAAACCTGGGCCCCCCGACTCTTGTTGCTCCCCCCTCA
TCCTTACATGTCTCCGGCCACTTTACTCGCCGTGCCCGCCTTATTTGTTT
GCCCCCCCCTGCGTTCCGACATTGCCCCTTGTTGCTTGCCTATTCCTCCC
CCGCCCCAGCTTACGGCCCCTACTCTTTACCTGCTGCTCCGCTACCTGTA
CCAACCCCCAAACTGATAATCGCTGATGACCCGCCCCCTGCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_d21.b1 MSMg01no105_d21.b1 CHROMAT_FILE:
MSMg01no105_d21.b1 PHD_FILE: MSMg01no105_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:48 2005
         (242 letters)



>mm_chr17_35375092_35375733
          Length = 642

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagtgcctgtatcatgaccgcactctgcgtgcctgccagaattctaaccccctctcctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagtgcctgtatcatgaccgcactctgcgtgcctgccagaattctaaccccctctcctga 260

                                                                       
Query: 61  cttttttattccttgtgttccagctttgttcagccactgtgacactaataaccctctaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 cttttttattccttgtgttccagctttgttcagccactgtgacactagtaaccctctaaa 320

                                                                       
Query: 121 gaatttgtttctctggctctcccttggcacatcatgcccccgaacagttaaatgataatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatttgtttctctggctctcccttggcacatcatgcccccgaacagttaaatgataatg 380

                                                                       
Query: 181 ttatttagcccctctgtccgagtcccaaatatatatcaaatctcttagcacctctctgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatttagcccctctgtccgagtcccaaatatatatcaaatctcttagcacctctctgtt 440

             
Query: 241 tc 242
           ||
Sbjct: 441 tc 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no105_d21.g1 MSMg01no105_d21.g1 CHROMAT_FILE:
MSMg01no105_d21.g1 PHD_FILE: MSMg01no105_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:49 2005
         (121 letters)



>mm_chr17_35692479_35692999
          Length = 521

 Score =  211 bits (109), Expect = 1e-59
 Identities = 118/121 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcgtacccgagcaagggcccttatagctgacagagccagtgtcacagggctgaaccccgc 60
           ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 321 tcgtacccgagcaagggcccttagagctgacagagccagtgccacagggctgaaccccgc 262

                                                                       
Query: 61  cagagcccacgggctggaacgtaacgcccactgggtagccactggaactggaagagccac 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagagcccacgggctggaacgcaacgcccactgggtagccactggaactggaagagccac 202

            
Query: 121 g 121
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 521
Length adjustment: 8
Effective length of query: 113
Effective length of database: 513
Effective search space:    57969
Effective search space used:    57969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)