BAC Information

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BAC

Clone NameMSMg01-105E23
Chromosome17 (Build37)17 (Build37)
Map Location 35,375,293 - 35,375,60335,692,541 - 35,692,799
singlet/doubletsingletsinglet
Overlap geneAtp6v1g2
Upstream geneH2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1
Downstream geneBat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333
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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105E23.T7 (MSMg01no105_e23.b1)MSMg01-105E23.TJ (MSMg01no105_e23.g1)
ACCAG319698AG319699
length703708
length of high quality
(start - end)
311 (70 - 380)259 (67 - 325)
definitionCHROMAT_FILE: MSMg01no105_e23.b1 PHD_FILE: MSMg01no105_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:54 2005CHROMAT_FILE: MSMg01no105_e23.g1 PHD_FILE: MSMg01no105_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:54 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(35,375,293 - 35,375,603)(35,692,541 - 35,692,799)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAAGATAGGCGGAATTCA
GCATAGTTTCCGATGACGGAGTGCCTGTATCATGACCGCACTCTGCGTGC
CTGCCAGAATTCTAACCCCCTCTCCTGACTTTTTTATTCCTTGTGTTCCA
GCTTTGTTCAGCCACTGTGACACTAGTAACCCTCTAAAGAATTTGTTTCT
CTGGCTCTCCCTTGGCACATCATGCCCCCGAACAGTTAAATGATAATGTT
ATTTAGCCCCTCTGTCCGAGTCCCAAATATATATCAAATCTCTTAGCACC
TCTCTGTTTCTCCTGAGTTGTTCTTTCTCATGGTTGGCCCCCCTCTTTCT
CTGTTTTCCCAAATCTTGCTGCTTCCGGGAGCTGAAGATATCTATGACAT
TCACATGCATGCATTCCTTTGTGTGCCATCTTCATCTTGCCTCCTTGCGT
AACAGCGGAGTGTCTATAAAATACTGGCGTATGAGTCTATTGTTGCAGAA
AGCAGCCTCCTTTTTGCCTTGCCGTTGCTCCATTTGATTCGCTGTCCCTC
ACAGTTATGCACCTATATAGTTTCCCAACCATTGCCAATGCCTGTCCCGC
AAACTTTATGGAAAAACAAATCAACCCTCACTGTGCTCCCTCTTGAACAC
ATATCTTATAAACAACTGTAAGTCTAATCGTGTTACTATCACACCCTTTC
CCT
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCGTACCCGAGCAAGGGCCCTTAGAGCTGACAGA
GCCAGTGCCACAGGGCTGAACCCCGCCAGAGCCCACGGGCTGGAACGCAA
CGCCCACTGGGTAGCCACTGGAACTGGAAGAGCCACGGCTGGGGATGATG
GGGTTGCTAGAGAAGTACTTGCCCTCAGAGACTGGGGGCCCAGCTGCAAA
GGAGGGGGCCCCTGGCGAGCCCCTGATAGGGTTGTCCTTGGTGAAGTAGC
CCACGGGGTAGATTTTACCCCCACTGTAGGCCATGCCTGGGACCAGATAA
CTGTTGGCAGAGCCACCCACCACCTCATAGCCGCCATAGGGTTTCTGGAC
AGAGGTGATGGCAGCTCAGGCCTTACCTGCGGGGCCTCCATTGCTACAGG
GCATGCCTTTGAAACCCAGGGTCACCAGAGCCATGTTGCTCCACCACCTC
CACTATTGGTCTCTGGGCACCGTATACCTTGTGTGTGCCAGAGATGTATG
TCCCCGACTGTGTGATGACCGGTCCCCCGCTCTCCGTAGACTCGCGCTCG
TCGGAGCTTCTTGGCCCCTCGGTTCTGATCTGCTCGTTCTGGAAACGCGA
CGAGCCTCCTAGACTCTAAAAATGCCTGATGTCTTCGTCACTGGTTGTCT
ATAACATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_e23.b1 MSMg01no105_e23.b1 CHROMAT_FILE:
MSMg01no105_e23.b1 PHD_FILE: MSMg01no105_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:54 2005
         (311 letters)



>mm_chr17_35375093_35375803
          Length = 711

 Score =  586 bits (303), Expect = e-172
 Identities = 309/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgcctgtatcatgaccgcactctgcgtgcctgccagaattctaaccccctctcctgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgcctgtatcatgaccgcactctgcgtgcctgccagaattctaaccccctctcctgac 260

                                                                       
Query: 61  ttttttattccttgtgttccagctttgttcagccactgtgacactagtaaccctctaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttttattccttgtgttccagctttgttcagccactgtgacactagtaaccctctaaag 320

                                                                       
Query: 121 aatttgtttctctggctctcccttggcacatcatgcccccgaacagttaaatgataatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatttgtttctctggctctcccttggcacatcatgcccccgaacagttaaatgataatgt 380

                                                                       
Query: 181 tatttagcccctctgtccgagtcccaaatatatatcaaatctcttagcacctctctgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatttagcccctctgtccgagtcccaaatatatatcaaatctcttagcacctctctgttt 440

                                                                       
Query: 241 ctcctgagttgttctttctcatggttggcccccctctttctctgttttcccaaatcttgc 300
           |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcctgagctggtctttctcatggttggcccccctctttctctgttttcccaaatcttgc 500

                      
Query: 301 tgcttccggga 311
           |||||||||||
Sbjct: 501 tgcttccggga 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no105_e23.g1 MSMg01no105_e23.g1 CHROMAT_FILE:
MSMg01no105_e23.g1 PHD_FILE: MSMg01no105_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:54 2005
         (259 letters)



>mm_chr17_35692341_35692999
          Length = 659

 Score =  501 bits (259), Expect = e-146
 Identities = 259/259 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcgtacccgagcaagggcccttagagctgacagagccagtgccacagggctgaaccccgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tcgtacccgagcaagggcccttagagctgacagagccagtgccacagggctgaaccccgc 400

                                                                       
Query: 61  cagagcccacgggctggaacgcaacgcccactgggtagccactggaactggaagagccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cagagcccacgggctggaacgcaacgcccactgggtagccactggaactggaagagccac 340

                                                                       
Query: 121 ggctggggatgatggggttgctagagaagtacttgccctcagagactgggggcccagctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ggctggggatgatggggttgctagagaagtacttgccctcagagactgggggcccagctg 280

                                                                       
Query: 181 caaaggagggggcccctggcgagcccctgatagggttgtccttggtgaagtagcccacgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 caaaggagggggcccctggcgagcccctgatagggttgtccttggtgaagtagcccacgg 220

                              
Query: 241 ggtagattttacccccact 259
           |||||||||||||||||||
Sbjct: 219 ggtagattttacccccact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)