BAC Information

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BAC

Clone NameMSMg01-105L16
Chromosome17 (Build37)
Map Location 77,164,046 - 77,164,374
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043885, LOC100043886
Downstream geneEG624348, LOC545234, LOC100043887
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105L16.T7 (MSMg01no105_l16.b1)MSMg01-105L16.TJ (MSMg01no105_l16.g1)
ACCAG320005AG320006
length719730
length of high quality
(start - end)
492 (41 - 532)329 (83 - 411)
definitionCHROMAT_FILE: MSMg01no105_l16.b1 PHD_FILE: MSMg01no105_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:27 2005CHROMAT_FILE: MSMg01no105_l16.g1 PHD_FILE: MSMg01no105_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCACCTGACCCATAACGAATGGCAGAGAAGCACCTGAAAAAATGTTCAAC
ATCCTTAATCATCAGTGAAATGCAAATCAAAACAACTCTGAGATTCCACC
TCACACCAGTCAGAATGGCTAAGATCAAAAATTTAGGTGACAGCAGATGC
TGGCGAGGATGTGTAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTG
CAGGCTTGTACAACCACTCTGGAAATCTGTCTGGCGGTTCCTCAGAAAAT
TGGACTTAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATAT
CCAGAAGATACCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCAT
AGCAGCCTTATTTATAATAGACAGAAGCTGTAAAGAACCCAGATGCCCCT
CAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTAC
TACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGAT
GGACCTGTAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAATT
CACACAATATGTACTCACTGATTAGTGGATATTAGCCTAATACCTACGAT
ACCTCTTATATTAGATACCATTTCCTAAACAATTGAAACTCAAGATAAAT
GAAGACTGACGCGCGAACA
ACTTCTTTCTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCCAGATAATTTTGA
ATATCAATGACATAGGGAAAAATTGAACACACCAAATGAAATGAAAAAAT
TGAAATCAGAGTTTGTTCAAAAAATATAATTAGTATGGTTCTAATAAATG
GCTCTGTTGATAGACAATTCATCCAGATCTAGATTCAACAAACTAGTGTA
AATGATACCAAAGCTATTATATGAAATAACAGAAATGTTTTCTTAGTTGG
ACCTGAAATTTCATACTTCCTCTATATCCTAATATATTTGGGAGGTAGTA
TGCTAGGTGTACATAATTAAATAATGGACTATTTCTCCTAAATTATCTCT
TTCATTCACCAAGCACTTGAACCCTGAGAAAGAATTTTTAACAGAATCTA
CTGTTCAAAAAAGAATAACACTAATGAAAATGGCAAGTGCCTCTCCATTC
TCATGTTACACTGGCTATGATTGCCATTAATCCATTCAAACAGCTGTGTC
TATGCTAGTATCCGAGGACACCAACTGTACGTCTGTATACAAATTCTATT
CCACAAAATAAACGTGATGGCTTGTATTGTTTAAAATAATGCCCTATGTA
ACTTTATATCGCCTCCCATCTAAGTTATATTTTGATAAATGAATTGCACA
ATGCATTGTTCAGAATACTGCCAGACCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_l16.g1 MSMg01no105_l16.g1 CHROMAT_FILE:
MSMg01no105_l16.g1 PHD_FILE: MSMg01no105_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:27 2005
         (329 letters)



>mm_chr17_77163846_77164574
          Length = 729

 Score =  621 bits (321), Expect = 0.0
 Identities = 327/329 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttccagataattttgaatatcaatgacatagggaaaaattgaacacaccaaatgaaat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 529 atttccagataattttgaatatcaatgacatagggaaaaattgaacacaagaaatgaaat 470

                                                                       
Query: 61  gaaaaaattgaaatcagagtttgttcaaaaaatataattagtatggttctaataaatggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gaaaaaattgaaatcagagtttgttcaaaaaatataattagtatggttctaataaatggc 410

                                                                       
Query: 121 tctgttgatagacaattcatccagatctagattcaacaaactagtgtaaatgataccaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tctgttgatagacaattcatccagatctagattcaacaaactagtgtaaatgataccaaa 350

                                                                       
Query: 181 gctattatatgaaataacagaaatgttttcttagttggacctgaaatttcatacttcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gctattatatgaaataacagaaatgttttcttagttggacctgaaatttcatacttcctc 290

                                                                       
Query: 241 tatatcctaatatatttgggaggtagtatgctaggtgtacataattaaataatggactat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tatatcctaatatatttgggaggtagtatgctaggtgtacataattaaataatggactat 230

                                        
Query: 301 ttctcctaaattatctctttcattcacca 329
           |||||||||||||||||||||||||||||
Sbjct: 229 ttctcctaaattatctctttcattcacca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)