BAC Information

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BAC

Clone NameMSMg01-105O10
Chromosome17 (Build37)
Map Location 17,997,757 - 17,998,071
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2, Lix1, LOC383297, Lnpep, EG665140, LOC100041519, EG626942, 4930546H06Rik, Has1
Downstream geneFpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114, EG433070, Vmn2r-ps115, Vmn2r-ps117, LOC100042183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105O10.T7 (MSMg01no105_o10.b1)MSMg01-105O10.TJ (MSMg01no105_o10.g1)
ACCAG320132AG320133
length691696
length of high quality
(start - end)
531 (49 - 579)387 (77 - 463)
definitionCHROMAT_FILE: MSMg01no105_o10.b1 PHD_FILE: MSMg01no105_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:41 2005CHROMAT_FILE: MSMg01no105_o10.g1 PHD_FILE: MSMg01no105_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCAACTTATTACCACCAAAGGGCTGAGAAGCACTTGAAAAAA
TGTTCAACATCCTTAATCATCAGGGAGATGCAAAGCAAAACAACCCTGAG
ATTCTACCTCACACAAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACA
GCAGATGCTGGCGAGAATGTGGAGAAAGAGGAACACTCCTCCATTGTTGG
TGGGATTGCAAGCTGGTACAACCACTCTGGAAATCCGACTGGCGGTTCCT
CAGAATACTGGACATAGTACTACTGGTAGATCCAGCAATACCTCTCCTGG
GCATATACCCAGAAGATGTTCCAACTGGTAAAAGGACACATGCTTCACTA
TGTTCATAGTAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCCAGA
TGTTCCTCAACAGAGGAATGGATACAGAAAATGTGGTAATTTACACAATG
GAGTACTACTCAGCTATTAAAAACAAGTTTATGAAATTCTTAGGCAAATA
CACGTATCTGGAGGATATCATCCTGAGTGAGGTAACCCAATCACAAAAGA
AGTCACTTGATATGCACTCCCTGATAAGTGGCTATTAGCCCAAAAACCTA
GAATACCCTAGATACATTTTCCAATATCCAAAAATTCAGAA
NCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTGCAGGAACTCATGTAGGAGCT
TGAAGAAGAAACCATGAAAGACTGCCACTAGACTGGATCACTTGTAGACT
CATGGTTAGTTAGAAGTATTCTCAGCCCATGTCCACCTTCCTTTGGATAC
CACCTACAGTGGTGTGGGCTCTCCTACATCAATCATTTGTCAAGATGTTC
TCTGTCAACCATGGCCTCAAGCCAATCTGATCTAGAGGCTCTCCTCTCAA
GTAACTCTAGACTGTATATAGTTGACACTGTAAGCTAACTATGACAAGAG
GTAACTGGGGAAAAGTATACAAAGTAGGTACCCAGTTGGTAGGCATGTCT
TCCTGTGGTTAGAACTTCCTTGCAATTAAACATTCTTAAAGCAGTTAGGT
TGTTCTCCTCATATTAGAAACTAAGACAAGGGGAGGAGAAAGAAGGTGGA
TGATATGGGGGCATTGTGGAGGTGTCAACATGTTAGGGAATAAGCTTTCC
ATTTCACCTGTCTCGTACTTTCTCGCCTCATTTTTTCACTTTTCTTCACT
TACCCACTCTTGTGCATTTTTCCTATCCCTTTGTCTGTACCCATCCCCCT
CCCTATTTTTCATTTTCCCTTTCTTACTCTATTTTTCTACTCACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_o10.g1 MSMg01no105_o10.g1 CHROMAT_FILE:
MSMg01no105_o10.g1 PHD_FILE: MSMg01no105_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:41 2005
         (387 letters)



>mm_chr17_17997287_17998073
          Length = 787

 Score =  609 bits (315), Expect = e-179
 Identities = 315/315 (100%)
 Strand = Plus / Minus

                                                                       
Query: 73  ctcatggttagttagaagtattctcagcccatgtccaccttcctttggataccacctaca 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 ctcatggttagttagaagtattctcagcccatgtccaccttcctttggataccacctaca 726

                                                                       
Query: 133 gtggtgtgggctctcctacatcaatcatttgtcaagatgttctctgtcaaccatggcctc 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gtggtgtgggctctcctacatcaatcatttgtcaagatgttctctgtcaaccatggcctc 666

                                                                       
Query: 193 aagccaatctgatctagaggctctcctctcaagtaactctagactgtatatagttgacac 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 aagccaatctgatctagaggctctcctctcaagtaactctagactgtatatagttgacac 606

                                                                       
Query: 253 tgtaagctaactatgacaagaggtaactggggaaaagtatacaaagtaggtacccagttg 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tgtaagctaactatgacaagaggtaactggggaaaagtatacaaagtaggtacccagttg 546

                                                                       
Query: 313 gtaggcatgtcttcctgtggttagaacttccttgcaattaaacattcttaaagcagttag 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gtaggcatgtcttcctgtggttagaacttccttgcaattaaacattcttaaagcagttag 486

                          
Query: 373 gttgttctcctcata 387
           |||||||||||||||
Sbjct: 485 gttgttctcctcata 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)