BAC Information

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BAC

Clone NameMSMg01-105P04
Chromosome17 (Build37)
Map Location 88,186,670 - 88,187,008
singlet/doubletsinglet
Overlap geneKcnk12
Upstream geneEpas1, 1700090G07Rik, Atp6v1e2, Rhoq, Pigf, Cript, EG433144, Socs5, Mcfd2, Ttc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2
Downstream geneLOC626888, LOC668863, EG626920, Msh6, Fbxo11, EG225058, Foxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105P04.T7 (MSMg01no105_p04.b1)MSMg01-105P04.TJ (MSMg01no105_p04.g1)
ACCAG320167AG320168
length701715
length of high quality
(start - end)
339 (68 - 406)241 (89 - 329)
definitionCHROMAT_FILE: MSMg01no105_p04.b1 PHD_FILE: MSMg01no105_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:44 2005CHROMAT_FILE: MSMg01no105_p04.g1 PHD_FILE: MSMg01no105_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGG
AATTCCCGTAACTCACGCTGGCCTTGAACTTGCTACGCAGTTGAGGATTG
TTCTTCTCTCTGATCAGAGTGGTGGCCTGAGGGGGAAATGCAGGACCTCT
GGGGGTGACAAAGGTCCCAGGCCACTGTGGGCACAATAAGAACAGACTCT
TGGGAGGCAGGCTTCACTGAGCAACTCTTTGAATTGGGAGAACAAAGGCT
GTTTAAAGCTTGGAGGAGTGGGTAGATGCTTTCAGGGTGAGTATGCGACA
TTGGGGTACGCCTTATTTACATGAAGAGGAATTCTAGGTATTTGCAGGAC
ATGATCTTATAACCTGTTACCTGGACACCAGGCTATGTGACCACCTCAAG
GGTGGCAGAGGAGGGGGTCATAAGGCTATGAGCACCGGAACTATATAGGC
CCAGGACAGGGAGGGACCGGTCCTACTCCTGCTGGTCTCAAGATGAGATT
TTTGCGGTTTGGACATGTGTCAACCTCAGTCTTGCCCTGCATTGGTTCCC
GTGGATGCATGGCTTTCCAGCCCCTTTCCAGCCATTCATATTACAACCTG
ATTCTTCTGCCTCTGACTTCCTACTATTGGTACTACCGTCTTCTATCCTC
CTGCCTGTGCCCTAATGCCTCCCCTACAATGTCTTTTTCTTGGCAGCCCC
G
NCTTACGTCTTTTATCGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATACGTATACAT
ACATACACATACACATACACACACATATACATACACACATCTATCTATCG
ATCATCTATCTATCTATCTATATCCCTGGCTGTCCCTGCAGTCACACAGA
TCTGCCTACCTCTGCCTCCTGAGTGCTGGGGTCAAAGGCATGCAGAACCA
TGTCCTTTTTGAGACAGGTTCTTGTAGGCTGGCCTTGGACTCCTGATCCT
CCTGCCTCCATCTCCCAAGTTCTGGGCCCTGTCTACTAAGAGAGAGTAGT
AATTTGGGAAAGCAGATGCTATGAATTTACCCTTCCCAAGATGAGCTTTA
CAAGGACATAGGGCCTTGCAGTCCCAGGGGCTGTGACTGGACCACTAGGT
AGGAGAGCTTTATGAGGTAAGGTGCATCATTCCAGAGCCTGGGGGTCAAG
GCGAGGACATAACATCTACACTTTGTGTAAAGCGTAGCACGAATATGCTT
TACCCTATTGAATACCATGTCCTGTTCTCTCAAACGATCTGTGCTTGATC
CCCAGCGTGCACACCATGTAACCTGTCACCTGAAGCTCAAACTAAAATAC
GTCTGGTGCCCGGGCACTGCCATTTGTTTATGCACACACACGTACATCTG
AATTTCATCCCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_p04.b1 MSMg01no105_p04.b1 CHROMAT_FILE:
MSMg01no105_p04.b1 PHD_FILE: MSMg01no105_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:44 2005
         (339 letters)



>mm_chr17_88186470_88187208
          Length = 739

 Score =  632 bits (327), Expect = 0.0
 Identities = 336/339 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggccttgaacttgctacgcagttgaggattgttcttctctctgatcagagtggtggcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ctggccttgaacttgctacgcagttgaggattgttcttctctctgatcagagtggtggcc 480

                                                                       
Query: 61  tgagggggaaatgcaggacctctgggggtgacaaaggtcccaggccactgtgggcacaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tgagggggaaatgcaggacctctgggggtgacaaaggtcccaggccactgtgggcacaat 420

                                                                       
Query: 121 aagaacagactcttgggaggcaggcttcactgagcaactctttgaattgggagaacaaag 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aagaacagactcttgggagacaggcttcactgagcaactctttgaattgggagaacaaag 360

                                                                       
Query: 181 gctgtttaaagcttggaggagtgggtagatgctttcagggtgagtatgcgacattggggt 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 359 gctgtttaaagcttggaggagtgggtagatgctttcagggtgagtgtgcgacattggggt 300

                                                                       
Query: 241 acgccttatttacatgaagaggaattctaggtatttgcaggacatgatcttataacctgt 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 299 acgccttatttacatgaagaggaattctaggtatgtgcaggacatgatcttataacctgt 240

                                                  
Query: 301 tacctggacaccaggctatgtgaccacctcaagggtggc 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tacctggacaccaggctatgtgaccacctcaagggtggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)