CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTTATATCGGATAAAAACAATGTGTTTTCTGTTTAAGAAACAAGGA
GCTAGGGAATGCTGATTCATGGGCTATTCAAAAGGGAACCTGGGGTGGAT
GATTGAATTGATGTGTAAATAAAAGATTGGGCTTTTGATCTGCAAGAGAT
GAGCTGTTCAAGAGATTTTAAAATAGCAAGAGAAAGCTGTCTTAGAGCAG
AGCACAGAGAGAGCAATCTGGAAAGCTGTCTCAAGCAGAACATAGGCCAT
CAGATTATAACCCACTATTTGACTTTGAGTCATTTGTTTCACCACTCTCA
AACACTCCTTCCTTAGAAAGTCAAGTCATGTGAGATGTGAGCTTTTCAAG
ACTGTCTTTTCTGACTAATAACATACTCTTTAAGATTCCTTTACTTAAGC
CATTTTGTTTTAAATAATAATTTCACTTGTAGTTGTTGAACCACTCTCTA
AGCCAAGGCTGATCCTTGGCACTAAGGTGGATATTGACAAAAATGTAATA
TCATGCAAACATAATTATGCTATTAATCATATTTCACACTGCCCCATAAC
TCTTGTCAGTACCTCTTCATCCTATTCTTACCCTGGTTTCTCTAGAAGCT
AATTATGGTATTATTACTGTGTCACACTTTTGACTTTTAATAGTTTTGCA
TAGTTCAA

ATTTTACTNTTGCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTTATTTGTTT
TCCATTTTTTATTAGGTATTTACTTCATTTACATTCCTAATTCTATCCCG
AAAGTCCCCTATACCCTCCGCACCCAACTCCCCTACCTACCCAATCCCAC
TTCTTGGCCCTGGTGTTCCTCTGTACTGGGGTATATAAAGTTTGCAAGAC
CAAGGGGCCTCTCTTCCCAGTGATGGCCGATTAGGCCATCTTCTGCTACA
TATGCAGCTAGAGACACAAGCTCTGAGGGTGCTGGTTAGGATGCTCACAG
TCACCTATTGGATGGAACACAGGGCCCCCAATGGAGAAGCTAGAGAAAGT
ACCCAAGGAGCTGAAGGGGTCTGCAACCCTATAGTTGGAATTCCATTTAT
TAACTGATGATCTTATTGCCTGTACTATGAGCATTCCACTCAGGAAGTTG
TTTCCTGTGCCATTTCATTCAAGGCAGTTTTCCGTTTTTTCTTCTATCAG
GATTATTGTATTTGGCTTTATGTTGTGGTCTTTGATCCACATGGACTTGA
CCTTTGTGCAGGGTGATAAAAATTGATTTATTTTGATTCTTTCACATGAA
TCCATCCAATTTGACCATCACCATTTGTTGAAGATGCTGCCTTTTCCCCC
CAGTGCATATGCTGTGTAATAA

Query= MSMg01no105_p10.b1 MSMg01no105_p10.b1 CHROMAT_FILE:
MSMg01no105_p10.b1 PHD_FILE: MSMg01no105_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:46 2005
         (650 letters)



>mm_chr17_93880958_93882007
          Length = 1050

 Score = 1189 bits (615), Expect = 0.0
 Identities = 640/649 (98%), Gaps = 5/649 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttat-atcggataa--aaacaatgtgttttctgtttaagaaacaaggagcta 61
           |||||||||||| || || |||  |||||||||||||||||| |||||||||||||||||
Sbjct: 966 gaattcttttataat-gg-taaacaaacaatgtgttttctgtctaagaaacaaggagcta 909

                                                                       
Query: 62  gggaatgctgattcatgggctattcaaaagggaacctggggtggatgattgaattgatgt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 gggaatgctgattcatgggctattcaaaagggaacctggggtggatgattgaattgatgt 849

                                                                       
Query: 122 gtaaataaaagattgggcttttgatctgcaagagatgagctgttcaagagattttaaaat 181
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 848 gtaaataaaagattgggcttttgatctgcaagagatgagctgtccaagagattttaaaat 789

                                                                       
Query: 182 agcaagagaaagctgtcttagagcagagcacagagagagcaatctggaaagctgtctcaa 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 agcaagagaaagctgtcttagagcagagcacagagagagcaatctggaaagctgtctcaa 729

                                                                       
Query: 242 gcagaacataggccatcagattataacccactatttgactttgagtcatttgtttcacca 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 728 gcagaacataggccatcagattataacccactatttgactttgagtcatttgtctcacca 669

                                                                       
Query: 302 ctctcaaacactccttccttagaaagtcaagtcatgtgagatgtgagcttttcaagactg 361
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ctctcaagcactccttccttagaaagtcaagtcatgtgagatgtgagcttttcaagactg 609

                                                                       
Query: 362 tcttttctgactaataacatactctttaagattcctttacttaagccattttgttttaaa 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tcttttctgactaataacatactctttaagattcctttacttaagccattttgttttaaa 549

                                                                       
Query: 422 taataatttcacttgtagttgttgaaccactctctaagccaaggctgatccttggcacta 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 taataatttcacttgtagttgttgaaccactctctaagccaaggctgatccttggcacta 489

                                                                       
Query: 482 aggtggatattgacaaaaatgtaatatcatgcaaacataattatgctattaatcatattt 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aggtggatattgacaaaaatgtaatatcatgcaaacataattatgctattaatcatattt 429

                                                                       
Query: 542 cacactgccccataactcttgtcagtacctcttcatcctattcttaccctggtttctcta 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cacactgccccataactcttgtcagtacctcttcatcctattcttaccctggtttctcta 369

                                                            
Query: 602 gaagctaattatggtattattactgtgtcacacttttgacttttaatag 650
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gaagctaattatggtattattactgtgtcacacttttgacttttaatag 320



 Score =  165 bits (85), Expect = 1e-44
 Identities = 117/129 (90%), Gaps = 4/129 (3%)
 Strand = Plus / Minus

                                                                       
Query: 328 tcaagtcatgtgagatgtgagcttttcaagactgtcttttctgactaataacatactctt 387
           |||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||
Sbjct: 308 tcaagtcatgtgagatgtgagcttttcaagactgtcttttttgactaatgatatactctt 249

                                                                       
Query: 388 taagattcctttacttaagccattttgttttaaataataatttcacttgtagttgttgaa 447
           ||||||||||||||| ||| || ||| |||   |||||||||||||||| ||||||||||
Sbjct: 248 taagattcctttactaaagtcagtttcttt---ataataatttcacttgcagttgttgaa 192

                    
Query: 448 ccactctct 456
           ||| |||||
Sbjct: 191 cca-tctct 184


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)