Query= MSMg01no106_d03.b1 MSMg01no106_d03.b1 CHROMAT_FILE:
MSMg01no106_d03.b1 PHD_FILE: MSMg01no106_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:16 2005
(534 letters)
>mm_chr17_58725032_58725965
Length = 934
Score = 955 bits (494), Expect = 0.0
Identities = 516/528 (97%), Gaps = 8/528 (1%)
Strand = Plus / Plus
Query: 1 attctcttcagtttatctttcacagggcatcactcataattaccaattttcaggctaatc 60
|||||||||||||||| |||||||| |||||| |||||||||||||||||||||||| ||
Sbjct: 201 attctcttcagtttatatttcacagagcatcaatcataattaccaattttcaggctagtc 260
Query: 61 actgagaacagtttcaaactatcaggaatgacatgaagaagaaaatatgtgaatcaaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgagaacagtttcaaactatcaggaatgacatgaagaagaaaatatgtgaatcaaaca 320
Query: 121 tagtcctcacactggggccactccccagtcccacacaagggccttctatatccaaatggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtcctcacactggggccactccccagtcccacacaagggccttctatatccaaatggc 380
Query: 181 agctgacttatactctacaatctgtaataatcttccttgttcagagatattcacctgagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctgacttatactctacaatctgtaataatcttccttgttcagagatattcacctgagg 440
Query: 241 caaatggaacatgattaaaatcaaggttgtttttcctgaactcataatcaaacagtaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaatggaacatgattaaaatcaaggttgtttttcctgaactcataatcaaacagtaatt 500
Query: 301 atagtaattataaaagaaacctgcattgaatgtgaacacttcccaacatagaacattttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atagtaattataaaagaaacctgcattgaatgtgaacacttcccaacatagaacattttc 560
Query: 361 ttatgcagatttgaacagaattgttctgtgactatgaaagttgacatgctttgcttttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttatgcagatttgaacagaattgttctgtgactatgaaagttgacatgctttgcttttct 620
Query: 421 tcctcccatcccccctctctccctctccccctctctcctctctctctctctctctctctc 480
||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 tcctcccatcccccctctc--------cccctctctcctctctctctctctctctctctc 672
Query: 481 tctctctctctctctctctctctctctctctctctctctctctctctc 528
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tctctctctctctctctctctctctctctctctctctctctctctctc 720
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 125
Number of extensions: 48
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no106_d03.g1 MSMg01no106_d03.g1 CHROMAT_FILE:
MSMg01no106_d03.g1 PHD_FILE: MSMg01no106_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:17 2005
(543 letters)
>mm_chr17_58854560_58855502
Length = 943
Score = 547 bits (283), Expect = e-160
Identities = 356/393 (90%), Gaps = 21/393 (5%)
Strand = Plus / Minus
Query: 3 ttttttctttctgtttttgttgttgccgttctttatgataaaagctgaaaacagtctaag 62
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 385 ttttttctttctgtttttgttgttgttgttctttatgataaaagctgaaaacagtctaag 326
Query: 63 tctccaaaagtggctaataagttattaacacaatatgcctttatgcaaacacaaaaagca 122
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 325 tctccaaaagtggctaataagttatgaacacaatatgcatttatgcaaacacaaaaagca 266
Query: 123 ctgtaaaatacttttttaatatatgaacatagtcgcaatatgttaagtataaaaaattac 182
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 ctgtaaaatactttttaaatatatgaacatagtcacaatatgttaagtataaaaaattac 206
Query: 183 tatggggctggaaatattactcaacagtgcagagcatttactgctctcgtagaagacctt 242
||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 205 tatggggctggaaatattactcaac-----------------gctcttgtagaagacctt 163
Query: 243 ccttctgcttgaatacctatatcacattcacaagcatgtaaaacctcagtcccaaagaac 302
||||||| ||||||||||||||||||||| |||||||||||||||||||| ||| |||||
Sbjct: 162 ccttctgtttgaatacctatatcacattctcaagcatgtaaaacctcagttccatagaac 103
Query: 303 ctgacacctctcctctggtctccaggggcacatgagttcatacatacacacataca---- 358
|||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||
Sbjct: 102 ctgacacctctcctctggcctccaggggaacatgagttcatacatacatacatacatatg 43
Query: 359 tacatacatacatacatacatacatacatacat 391
|||||| |||||||||||||||||||||||||
Sbjct: 42 tacatatgtacatacatacatacatacatacat 10
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
