BAC Information

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BAC

Clone NameMSMg01-106I24
Chromosome17 (Build37)
Map Location 65,959,516 - 65,959,764
singlet/doubletsinglet
Overlap geneVapa
Upstream geneMan2a1, 4930583I09Rik, LOC100043871, E130009J12Rik, LOC668655, LOC674701
Downstream geneTxndc2, Rab31, Ppp4r1, Ralbp1, LOC100043873, LOC100043592, Twsg1, Ankrd12, 5430411C19Rik, Ndufv2, ORF19, Ddx11, LOC100043599, LOC100043875, 1110012J17Rik, LOC100043876, Rab12, 9130404H23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106I24.T7 (MSMg01no106_i24.b1)MSMg01-106I24.TJ (MSMg01no106_i24.g1)
ACCAG320615AG320616
length1,1531,465
length of high quality
(start - end)
244 (48 - 291)80 (123 - 202)
definitionCHROMAT_FILE: MSMg01no106_i24.b1 PHD_FILE: MSMg01no106_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:11 2005CHROMAT_FILE: MSMg01no106_i24.g1 PHD_FILE: MSMg01no106_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTAAAAGCTGGAAAAGAGGAAAATGGGCTGAACTCCTTGCCCTGAGGTA
GCTCTTGTGAGTACTGAGGAACACAGGGAGCTAGCTGTGCTGCCACTGTC
AGCCAGAAGCCACACCCCTTCTGTCTGAGAATGGTCTCCTCTTCCATCCC
AGGCTGCCTTTGGATTCCAGTACACCTGTGAGGATCTTGAATTCTTTTTA
AATAGAATTTTAAAAAATATTTATTTTTTATTTGTGTAAGTCTTTTCTTG
CATATACATGTGAACACTACTTGGGTCCTGAGTGCTTGTGGAGGCCAGAA
GAGGGTGGCAGGCCCTTTGGAATTGGAGTGACTATTGTCCATTAGTTACT
ATGTGGTTTCTTGGAATTGAACCTGCATCCTCAACAAGTATTCTCAACCA
CTGAGCCATCTCTTCAACCACTTTTAAAATTTTTTAAAAATATTTTTTGA
CAATTGTATGCGTGTGTTGCGTGCACACAGACACATTAACCTGATCATCT
TTTTGTTCTCCATCTGACCCTTCTGCCTCATGTTTCCCTCCTACCTTTGT
GTCTTCACTAAAAAATTAATATTTCATCTATTTATATGTGTGCGTCCTTC
ATGTGGACTTGTGTGCATATGCCCCTTGTAGTCTGTAGGTGTAGGATTCC
CTGAAGCTGTAATTATCTATGTTTGTGTCGTACCACCTGAATGCGTATGC
TTTTAGCTTGATTACTTCCTCTTGATAATATCTTCATGTTATTTGTCTTT
TCTATCTTCTTAGACCTCTCTGTGTTTTAAAAAATACCTTTTCCTTGAAT
CTCGTTTATTGTCTATTTCTCCTTGTGTTTCTTTTTCCTACAATTTTTCT
ATTCTTTTGTATGCCTCTTCTTTTTTACTCTATAAAACTTATACTTCCTT
TCTTTAATATATTTTTTATCTTTATATTATTCTTTTGTCACTCTTGTGTA
TTATTTTTTCTCTTGTTGGGTAACCTTCATTTCGTTTGTTGATTTGTCTC
TTTTTCCCTCTTATATATCTCTATAATATTCTTTTCTTTTGTTCCTCTTT
TTTTCTCTCTCCCTTTTTCTTAAATTCTTTTCTTCCCTCACTTTTTTTAT
CATCTTTTACAACCTTATTAATATGTGTTTCTCTTTTAATCATTTTTTTT
TCT
CTTTCCTNTTTTTGCATGGTAGCGTGGCGCCGGTCGTCTAXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACCCCTTATGGGCAACTCAGNAGGAAGTAA
TTATATAAGACGACCCTTGTCCTAATATCTTAAATTGGGGTGGATGGTTT
TGGTCGTTTGATGAGGTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTT
TTTGCCATAGTCTTCCTCTTTTCTATTTTTTTTTTTTTTTTTCTTTTTTA
TTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTACTATTTTTTTTTA
TTTTTTTTTTTTTTATTTTTCTCTTTTTTTTTTTTTTTCTTTTCTTTCTT
TTTTTTTTTTTTTCCTTTTTCTCTCTTTTTTATTTTTTTTTTTTTTTTTT
TTTTTCCTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTATTTCTCTTTT
TTTTTTTTTTTTTTCCTTTTTTTTTTTTTTCTCTCGTTTTTTTTTTTTCT
TTTTTCTTTTTTTTTTTCTTTTCGTTCTTTTTTTTTTTCTTTCTTTCTTT
TTCTTTCTTTTTTCTTTTATTTCTCCTCATATTTTTTATTTTTTTTTTAT
CTTTTTTTTATCTTTCTATATTCTTTTTTCTACCTTCATTTTTTTTTTCT
TTTTTTTTTTCTTTTTTTTTTTCTTTTTTTCTTTTTTTTTTTTTGTTACT
TTTTTTTTTTTTTTTTTTTTTCTTCTTTTTATTTTTTTTTCTTTTATTTT
TTTTTTTTTTTTTTTCTTATTTTTTTTACTTTTTTATTTCTCTCTTTTTT
TCTTTTTCTTTTTTTTTTTTTTTTCTTTTTTATGTTATTAACTTTTTTTT
TTTATTTTTTTTTTTACTTTCTTTCTTTTCTTTTTTTTCTTTTTTTTCTT
CTTCTTTCTTTTTTTTTTTTTTTTCTTATTCTTTTTTTCTTTTTCTTTTC
TTTTTTCTCTCTTTTTCTTCTTTATTTCTTTTTTTCCTTTTTTCTTTTTT
TTCTTTATCTTGTTTTTTTTACCGCTTTTTTTTTTTTTTTTTTCCCCTTT
TTTTNTCCTTNAGCGTTTTTTTTTTTTTTAATTATCTTTTCTTCCTTCTC
TTATTATTTTATTTTTTTTCTGTTTTTCTCTTCTTATTTATTTTTTTTTA
TTCTACCTTTTTCTCTTTCTTTTTTTTCTTTTTTTTTATTTTATTATTTT
TACTTTTCTTTCTTTTTTCCTTATTTTCTTTTATTCTCTTTCTTTTTTTC
TTTTCTTTCTCTTTTATTTTTTCCTCTTTTTATTATTTTTCTTTCTTTTC
TTTTTTTTATTTTTTCTCATCTTTTTTCTTTGTCTTTTTTATTCTCTCTT
TTTCTTTTATTTTTACTCTTCTTTATTTTTTTCTTTCTTTATTCTCTCTT
CTTTTTTTTATTTTCTTTCTTTTTCCTTCTTTTAATCTTTTCCTCATCAT
TTTATCTCTCTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_i24.b1 MSMg01no106_i24.b1 CHROMAT_FILE:
MSMg01no106_i24.b1 PHD_FILE: MSMg01no106_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:11 2005
         (244 letters)



>mm_chr17_65959415_65960061
          Length = 647

 Score =  431 bits (223), Expect = e-125
 Identities = 241/249 (96%), Gaps = 5/249 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtagctcttgtgagtactgaggaacacagggagctagctgtgctgccactgtcagccaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gtagctcttgtgagtactgaggaacacagggagctagctgtgctgccactgtcagccaga 291

                                                                       
Query: 61  agccacaccccttct---gtctgagaatggtctcctcttccatcccaggctgcctttgga 117
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 agccacaccccttctaaggtctgagaatggtctcctcttccatcccaggctgcctttgga 231

                                                                       
Query: 118 ttccagtacacctgtgaggatcttgaattctttttaaatagaatttt--aaaaaatattt 175
           ||||||||||||| |||||||||||||||||||||||||| ||||||  |||||||||||
Sbjct: 230 ttccagtacacctatgaggatcttgaattctttttaaatataatttttaaaaaaatattt 171

                                                                       
Query: 176 attttttatttgtgtaagtcttttcttgcatatacatgtgaacactacttgggtcctgag 235
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 170 attttttatttgtgtaagtcttttcttgtatatacatgtgaacactacttgggtcctgag 111

                    
Query: 236 tgcttgtgg 244
           |||||||||
Sbjct: 110 tgcttgtgg 102


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 647
Length adjustment: 9
Effective length of query: 235
Effective length of database: 638
Effective search space:   149930
Effective search space used:   149930
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)