BAC Information

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BAC

Clone NameMSMg01-110H18
Chromosome17 (Build37)
Map Location 25,147,324 - 25,303,969
singlet/doubletdoublet
Overlap geneCramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317
Upstream geneLOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l
Downstream geneBC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110H18.T7 (MSMg01no110_h18.b1)MSMg01-110H18.TJ (MSMg01no110_h18.g1)
ACCAG323399AG323400
length739727
length of high quality
(start - end)		422 (45 - 466)434 (74 - 507)
definitionCHROMAT_FILE: MSMg01no110_h18.b1 PHD_FILE: MSMg01no110_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:05 2005CHROMAT_FILE: MSMg01no110_h18.g1 PHD_FILE: MSMg01no110_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,147,324 - 25,147,738)(25,303,536 - 25,303,969)
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAGCCTGCTAAAGCTTTCTGAGCTTTCAGCTCAGTAGCTGGTGTT
ACCTTTCCTACTCACCAACTTCCCTGACCTTTATAATTTATCATGAACCT
TTGAGTAATATATTTGCACGTAAGTGCCTGCAGCAGCAATCCATTTGTGA
ATTCAAAGCCAGTCTGAGCTAGAGAGAACTGTCTCAAGAACAAAATTATA
TGCAATTACACAGTCTTGATAGTTTCCTCTCTGCCTTGGGGTCTGCTACC
TTCTCACACATCACAAACAGGTGGAGTCTTTGTCAGAATTAGGAATCATA
TGTTCAGGCTGTCTGCTATTGTAATGGATGTCACAGAGGGTGTGGCTGGA
AGCAAGACAAGAGTCTTTGTATATGTTAGCCGTTTTTGTTTTTGTTTTTG
TTTTTGTTTTTTTATAAACCCACACAGGACTTTGTTGTGAACCCATGTCT
GTTCTATAACTCGCTCTGTACACCCGCCTGTACTATCATGTCCCACTATT
TCCGCTTGTTTCTATGCCCTTCGCTCTCTTTATCCTTTCCCACCACCCGG
AGAACCTGGCATCTTCTTCCCTCCCCCGCCTATTCTTATTATTTATCTAA
ATTTATTACTCTCCAATTGCTCATCTTTTTTACAATTACTTCGTCTACCT
AGGGCTCTTCCCTCTCCTACGAATCTTCTCTTTTTCTTN

TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATGCTGAGCTGGAGCCTCCATAAGAG
AAGCTGGTGTGGCCGGGTGTGGTGGCACCCGCCTTTAATCCCAGCACTCG
GGAGGCAAGAGGCAGGAGGATTTCTGAGTTCGAGGCCAGCCTGGTCTCCA
GACTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAC
CCCACCCCCCAAAAAAAGAGAAGCTGGTGTGAAGACATCCCCCCCAGACA
TGTGGGAACACCCATGCATAGCTGCAGCAAGTGAGGGTGTGGGTGGGAAT
CCTAGATGTAACCCGTGGGCTGTGCCTCCTCCCCATGTTGCTCTCTTGCT
GCTCTGAGGGCCAGAAGGCACAGGACAGCCTTCTGTCCCCCCATCACACA
CACTCTGTAGTATGGCTGTCTCCTTTGGGACTTGCCATAGCCAGTGCCAT
TATGTAGCTGAGCAGTTGTGGTGACCTGTCTAGATCTTGGATTGCCGTCA
TGGCAATGATAAAACAGGTCTGACGACATTTTTATCTTTGGGCATTGGCT
CTTTTTCATCCCCTCTCGTTTTCATTTGTAGTTTTAACTTTTTTGTATTC
TCGCCCTGTCTTTCCTCTTCCCTTTTCTTCACGCCTCTTGACTATTTATT
TCTTTTGTTTTTTCTCCCTTTTCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_h18.b1 MSMg01no110_h18.b1 CHROMAT_FILE:
MSMg01no110_h18.b1 PHD_FILE: MSMg01no110_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:05 2005
         (422 letters)



>mm_chr17_25147120_25147941
          Length = 822

 Score =  795 bits (411), Expect = 0.0
 Identities = 414/415 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaagcctgctaaagctttctgagctttcagctcagtagctggtgttacctttcc 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagccagctaaagctttctgagctttcagctcagtagctggtgttacctttcc 264

                                                                       
Query: 65  tactcaccaacttccctgacctttataatttatcatgaacctttgagtaatatatttgca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tactcaccaacttccctgacctttataatttatcatgaacctttgagtaatatatttgca 324

                                                                       
Query: 125 cgtaagtgcctgcagcagcaatccatttgtgaattcaaagccagtctgagctagagagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgtaagtgcctgcagcagcaatccatttgtgaattcaaagccagtctgagctagagagaa 384

                                                                       
Query: 185 ctgtctcaagaacaaaattatatgcaattacacagtcttgatagtttcctctctgccttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgtctcaagaacaaaattatatgcaattacacagtcttgatagtttcctctctgccttg 444

                                                                       
Query: 245 gggtctgctaccttctcacacatcacaaacaggtggagtctttgtcagaattaggaatca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gggtctgctaccttctcacacatcacaaacaggtggagtctttgtcagaattaggaatca 504

                                                                       
Query: 305 tatgttcaggctgtctgctattgtaatggatgtcacagagggtgtggctggaagcaagac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tatgttcaggctgtctgctattgtaatggatgtcacagagggtgtggctggaagcaagac 564

                                                                  
Query: 365 aagagtctttgtatatgttagccgtttttgtttttgtttttgtttttgttttttt 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagagtctttgtatatgttagccgtttttgtttttgtttttgtttttgttttttt 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no110_h18.g1 MSMg01no110_h18.g1 CHROMAT_FILE:
MSMg01no110_h18.g1 PHD_FILE: MSMg01no110_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:05 2005
         (434 letters)



>mm_chr17_25303160_25303993
          Length = 834

 Score =  824 bits (426), Expect = 0.0
 Identities = 432/434 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgctgagctggagcctccataagagaagctggtgtggccgggtgtggtggcacccgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 catgctgagctggagcctccataagagaagctggtgtggccgggtgtggtggcacccgcc 751

                                                                       
Query: 61  tttaatcccagcactcgggaggcaagaggcaggaggatttctgagttcgaggccagcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 tttaatcccagcactcgggaggcaagaggcaggaggatttctgagttcgaggccagcctg 691

                                                                       
Query: 121 gtctccagactgagttccaggacagccagggctatacagagaaaccctgtctcaaacccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 gtctccagactgagttccaggacagccagggctatacagagaaaccctgtctcaaacccc 631

                                                                       
Query: 181 accccccaaaaaaagagaagctggtgtgaagacatcccccccagacatgtgggaacaccc 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 acccccccaaaaaagagaagctggtgtgaagacatcccccccagacatgtgggaacaccc 571

                                                                       
Query: 241 atgcatagctgcagcaagtgagggtgtgggtgggaatcctagatgtaacccgtgggctgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 atgcatagctgcagcaagtgagggtgtgggtgggaatcctagatgtaacccgtgggctgt 511

                                                                       
Query: 301 gcctcctccccatgttgctctcttgctgctctgagggccagaaggcacaggacagccttc 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 510 gcctcctccccatgttgctctcttgctgctctgagggtcagaaggcacaggacagccttc 451

                                                                       
Query: 361 tgtccccccatcacacacactctgtagtatggctgtctcctttgggacttgccatagcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tgtccccccatcacacacactctgtagtatggctgtctcctttgggacttgccatagcca 391

                         
Query: 421 gtgccattatgtag 434
           ||||||||||||||
Sbjct: 390 gtgccattatgtag 377


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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