Query= MSMg01no110_k03.b1 MSMg01no110_k03.b1 CHROMAT_FILE:
MSMg01no110_k03.b1 PHD_FILE: MSMg01no110_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:17 2005
(637 letters)
>mm_chr17_13732972_13734001
Length = 1030
Score = 1073 bits (555), Expect = 0.0
Identities = 609/631 (96%), Gaps = 11/631 (1%)
Strand = Plus / Minus
Query: 7 gaattccacaa-ctttgttttctcctgttactatagctaatctaatcgcagtgacctgga 65
||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 828 gaattccacaaccttttttttctcctgttactatagctaatctaatagcagtgacctgga 769
Query: 66 gtctatcccacatttgagtagggctcacaggaaactggcaatgtgtttccccacaacccc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 gtctatcccacatttgagtagggctcacaggaaactggcaatgtgtttccccacaacccc 709
Query: 126 tccttctggcctgcagattagaaggttaattgagatttctgcatatagattgtaaagtgc 185
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tccttctgggctgcagattagaaggttaattgagatttctgcatatagattgtaaagtgc 649
Query: 186 tggtatattctaggtctaccttcctccaagctgggctgagcttcattgccactcggaagg 245
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 tggtgtattctaggtctaccttcctccaagctgggctgagcttcattgccactcggaagg 589
Query: 246 taaagcctcagtgctctggatgaacaccagggcaagaacagtcctgaccaagccaggatg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 taaagcctcagtgctctggatgaacaccagggcaagaacagtcctgaccaagccaggatg 529
Query: 306 cagatggcaggtgtgaaggatgcagggtggtacaggacaacctttgaaaacaagtagttg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 cagatggcaggtgtgaaggatgcagggtggtacaggacaacctttgaaaacaagtagttg 469
Query: 366 tgtgtgacacacagaacaatatctctacctgactccaacttctctatggtttccacgttt 425
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 cgtgcgacacacagaacaatatctctacctgactccaacttctctatggtttccacgttt 409
Query: 426 agtggctgagtagcaaccccccccccatgtccccctgaatactctgaattagctgtcatt 485
|||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||
Sbjct: 408 agtggctgagtagcaa---cccccccatgtcgccctgaataccctgaattagctgtcatt 352
Query: 486 tcctgttc-tccaccacccccccatcttccctacaggtagataggcagagaacagaaagg 544
|||||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 351 tcctgttcttcc-ccccccccccaccttccctacaggtagataggcagagaacagaaagg 293
Query: 545 ttggtgaacttcagaagaaccttgcctggcatgttctacattctacatagtgtgctacta 604
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 292 ttggtgaacttcagaagaaccttgcctggcacgttctacattct-----gtgtgctacta 238
Query: 605 ttccctaccatgcccaggacacactaaaagg 635
|||||||||||||||||||||||||||||||
Sbjct: 237 ttccctaccatgcccaggacacactaaaagg 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1030
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1020
Effective search space: 639540
Effective search space used: 639540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_k03.g1 MSMg01no110_k03.g1 CHROMAT_FILE:
MSMg01no110_k03.g1 PHD_FILE: MSMg01no110_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:17 2005
(580 letters)
>mm_chr17_13588468_13589447
Length = 980
Score = 1098 bits (568), Expect = 0.0
Identities = 577/580 (99%)
Strand = Plus / Plus
Query: 1 actgctcgtagatttaactccttcccctgtgtttaacagctgtgagaatacagggagggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgctcgtagatttaactccttcccctgtgtttaacagctgtgagaatacagggagggc 260
Query: 61 tccaggttagcagaaaggacatgggtgtcacacacagctaggaacagctactttctgcca 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 tccaggttagcagaaaggacatgggtgtcacacatagctaggaacagctactttctgcca 320
Query: 121 gccttgttctttctagagaagacagctgtctagcaaggaataagaagaagtcagataaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccttgttctttctagagaagacagctgtctagcaaggaataagaagaagtcagataaga 380
Query: 181 agtcagggacgaatgtctcaaatcatagattcagctactgtaggactgggaaaaccatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtcagggacgaatgtctcaaatcatagattcagctactgtaggactgggaaaaccatga 440
Query: 241 atttgaatccactcaaggatcctgggccactggtgctgggacaccctaaggtccctttaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttgaatccactcaaggatcctgggccactggtgctgggacaccctaaggtccctttaa 500
Query: 301 gtagagcccaggtgcacagcatgagccctgggcttctctacctttgtgtactctccagag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtagagcccaggtgcacagcatgagccctgggcttctctacctttgtgtactctccagag 560
Query: 361 aggaactcttgttgaaacccactgtacagtggcaggaacatcaggagacacaaacgcttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggaactcttgttgaaacccactgtacagtggcaggaacatcaggagacacaaacgcttg 620
Query: 421 tctctaaacagcatgaaggttgacagtaatgtggaccaaagaggtggtggtctgggcctc 480
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 tctctaaacagcatgaaggttcacagtaatgtgtaccaaagaggtggtggtctgggcctc 680
Query: 481 ctctctccttcattctcaagcttatcttccaaggactccagaaacacagctaccagcagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctctctccttcattctcaagcttatcttccaaggactccagaaacacagctaccagcagg 740
Query: 541 atggccaggacaccacagcctagaaggacacatgggcggg 580
||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atggccaggacaccacagcctagaaggacacatgggcggg 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
