Query= MSMg01no110_o07.b1 MSMg01no110_o07.b1 CHROMAT_FILE:
MSMg01no110_o07.b1 PHD_FILE: MSMg01no110_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:37 2005
(617 letters)
>mm_chr17_31363041_31364057
Length = 1017
Score = 1071 bits (554), Expect = 0.0
Identities = 605/636 (95%), Gaps = 22/636 (3%)
Strand = Plus / Plus
Query: 4 ggaattctcccattaccccagcgaggttcacactctgtgaacagcctctgctgttctgct 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ggaattctcccatcaccccagcgaggttcacactctgtgaacagcctctgctgttctgct 241
Query: 64 aaccctcaagagagttgagccacccatgcacgcacccatgcacacacacacacacacac- 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aaccctcaagagagttgagccacccatgcacgcacccatgcacacacacacacacacaca 301
Query: 123 ---------------------acacacacactccgagtgcctgcctcctctgctcgttcc 161
||||||||||||||||||||||||||||||||||| |||
Sbjct: 302 cacacacacacacacacacaaacacacacactccgagtgcctgcctcctctgctcgctcc 361
Query: 162 tccatccccacctctatccccaaccacccacaggctgtgtcaatcacggccttgaggaat 221
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 362 tccatccccacctctatccccaaccacccacaggctgtgtcaatcacagccttgaggaat 421
Query: 222 ttgggagagctgcttccatcccccgatagccagaagcctactcaaccaggccaccacccc 281
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttgggagagctgcttccatccccagatagccagaagcctactcaaccaggccaccacccc 481
Query: 282 tgcattattgcagcccataatactctaccttctgaaacctagctatacaatctgcttccc 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tgcattattgcagcccataatactctaccttctgaaacctagctatacaatctgcttccc 541
Query: 342 cctcctcccccaaaaagtggaccagagtctaaatatgggtggatgcataaattaagttgt 401
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 542 cctcctccccaaaaaagtggaccagagtctaaatatggatggatgcataaattaagttgt 601
Query: 402 taaattcaacagctgacaaaaccataaccatctttgcattttcagtgggtggtaaccatt 461
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 602 taaattcaacagccgacaaaaccatgaccatctttgcattttcagtgggtggtaaccatt 661
Query: 462 tcccacgtttccagtaatgaatcaaactgttccttgtccataaaggaattggagaataac 521
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tcccacatttccagtaatgaatcaaactgttccttgtccataaaggaattggagaataac 721
Query: 522 cttgctagatcaatagatgctcagatatagcaaaggttcttggacatagacggtggcagg 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 cttgctagatcaatagatgctcagatatagcaaaggttcttggacatagacggtggcagg 781
Query: 582 cagaacttcgcatggaacacaacccagaagagccca 617
||||||||||||||||||||||||||||||||||||
Sbjct: 782 cagaacttcgcatggaacacaacccagaagagccca 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_o07.g1 MSMg01no110_o07.g1 CHROMAT_FILE:
MSMg01no110_o07.g1 PHD_FILE: MSMg01no110_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:37 2005
(554 letters)
>mm_chr17_31444765_31445718
Length = 954
Score = 955 bits (494), Expect = 0.0
Identities = 531/554 (95%), Gaps = 17/554 (3%)
Strand = Plus / Minus
Query: 1 tctaagcaggaaggaatcacagagacaacattccaatttccagggctggtcactggtgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tctaagcaggaaggaatcacagagacaacattccaatttccagggctggtcactggtgct 608
Query: 61 gatgtcagagcccttgtcacaggtcatacacgggggcttttaatgccacccactactgtc 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gatgtcagagcccttgtcacatgtcatacacgggggcttttaatgccacccactactgtc 548
Query: 121 ctctgaaaggccttcttacttgaaggtctccaagtgcttccctggaaagtactggctacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ctctgaaaggccttcttacttgaaggtctccaagtgcttccctggaaagtactggctacc 488
Query: 181 ccttactagcgccgccctagacaatgaaaaactctggagaaggcacccaggaccccagag 240
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 487 ccttactagcaccgccctagacaatgaaaaactctggagaaggcacccagaaccccagag 428
Query: 241 gcagtcatcctttatactgtctccagtgccagaagcctttccggggcagctagcccagct 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 427 gcagtcatcctttatactgtctccagtgccagaagcctttcgggggcagctagcccagct 368
Query: 301 caactgggaaggtcataactccagagtcctgggccaggtccctgccgactgttggaaggc 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 caactggtaaggtcataactccagagtcctgggccaggtccctgccgactgttggaaggc 308
Query: 361 aagcaggggacagagctgtaaagaggttgatcttggcaccagacagcatccttggttctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aagcaggggacagagctgtaaagaggttgatcttggcaccagacagcatccttggttctt 248
Query: 421 ctacaatagtcagaagccattcgctcctgtagtcaacccacaaatcaagtggggtgagaa 480
|||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 247 ctacaatagtcagaagccattcactcctgtagtcaacccacaaatca------------- 201
Query: 481 aacacacccacttccgtccctgttctgatgtaaatacaaagacttgatggctattgggac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ----cacccacttccgtccctgttctgatgtaaatacaaagacttgatggctattgggac 145
Query: 541 acctgttccctaac 554
||||||||||||||
Sbjct: 144 acctgttccctaac 131
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
