BAC Information

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BAC

Clone NameMSMg01-111H13
Chromosome17 (Build37)
Map Location 63,639,421 - 63,640,142
singlet/doubletsinglet
Overlap geneFbxl17
Upstream geneEfna5
Downstream genePpia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik, Fert2, LOC669778, Pja2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111H13.T7 (MSMg01no111_h13.b1)MSMg01-111H13.TJ (MSMg01no111_h13.g1)
ACCAG324133AG324134
length1,1651,189
length of high quality
(start - end)
723 (75 - 797)633 (80 - 712)
definitionCHROMAT_FILE: MSMg01no111_h13.b1 PHD_FILE: MSMg01no111_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:50 2005CHROMAT_FILE: MSMg01no111_h13.g1 PHD_FILE: MSMg01no111_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAACATTGGCGCTATAGACTACTAAGGGAGAGGATCCGCGGAATTCTTT
TACATTTTCACTCCTTATATCTGTTCTGTTCTGCCTCTGGTGTGTAAGAG
TCCCTCTTTAAGTGGCCCTTTCTCTCACTGGCATGCAATTGCCAATCATC
TACCCGGTCCTACTTAGTAAAGGCTCCATCAAGTGGGAAAGAAATATTTG
TAAAAGAACAGATCTAGATAGAATTCTGACCACAGATCTTCAAAACAAAG
CAACAGTGAAATTTTCTATAGCCATTTTAGTGACAAAATAGTAAATTATC
TTTATGGTCAGAATTCTACTATATCGAACAGTGCCTTGCCTCCCACCTCC
CTCCTTTGAAATTAAGGAAAAAGAAAAGAAGCAATGGCCTGTTTAAAATC
TTACAAATTATATCTTACCTGGTTCTGAAACAAATAAGCTTGGGAGACTA
CTTAGCACCCGAAACCTCCACTGCTTAGCTGCCATGTTGATCATCTCAGG
AACAGAGTGTGTGCCAAGACATCTGACTCCTCTTCTCAGCCCCACAATGA
TTTTGCAGTAAATGCTATTGGCTGCATTCTCAAAACATTCCAACCGCCTG
CCATAACCTTTGTTGCAACCACCAAAATTCACATCACTGCCACCTCTCTT
ACAACTTTACCCATCCCTGACTTCTCTGCTTCCATCCTTTCCCCAAAGCT
ACCTGCTCACTGTGTATCTTTCAGGTTATCTTTCAGGATATACGATGAGT
ACATGTCCTAAGTAATGTAAATCATAATCCTAAATAATTTTTGTGGGATA
TACATCAGACTGCCAGGACAGGACAGAACCAGAATTTGCCTGTTTGCTCA
CCAGCTCTGCTCTGGCTACGCAAATTCTTTTCTGTGTCACACCAGTATGC
TCCTGTTTCAAGGATGTAATTAGCCCCTGCTGTCCCGTTTATCTCCATGG
CTTAATCTTTACCTCGTGCCCTCTCTTCCATGAAGGGAAGCCTTCTCGTC
CCTACAGAAGAAATGTACACCCCTTTCACTGAACACCCTTCTCCTCTTAA
AACCCCTGTCCTGGAAAAAAACCCAGGGTCCTTGGCTGGTTCCCCTTAAA
TGCCCCTTCACCGGATGGCGGACCCCAAAACTAAAAAACCCCCCTTTGCC
CCACGTGGGCTAAAA
TTTTGGCCCAGGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTTTTCGAAGGAGGAAACTCAAGTGGCTGAT
AAAACTTAACGAAAAATTCAGTATCCTTAATCAAGGGAACGGAAATGAAA
ACTACCTTCAGATTTCATCTTCTACTCACCAGCGTGCCCAAGAATAAACT
TAAGTGGCAGATTTGCTGACTAGGAAGGATGTGAGGCCCTGAGGATGCTC
AGCCACTGCTTGTGGGAGTGCAAACTTGTACAGCCACCATGGGAACCAGG
GTGCAAACTCCTCAGGAAGGTGGGGACTGACCTACGAGTAGATGCAGCTG
TACTACTCTTGGGTGTAAACACAAAGGACACTTTATCCTACCACAGAGAT
ACTTGCTTAATCATGCTCAATGCTGCTTTAGTCATAATAGCCAGATATTG
GAAATAACCTACATATCTCTCAACAGAAAATAGATAAAGAAAATGGAGTA
GTAATCAGTTGTTAAAAAAATCTGGGCTGTTGGTGGCAAGGCCTCTCTTG
CTGATGACAAGACCCATACAACTCACTGAACGTAAAGAAGTTGAGCTGGT
AGCCAGGCAGCAGTGGCACACGCCTTTAATTCCAGCACTTGGGGGGCAGA
GGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTATGGAGTGAGTTC
CAGGACAGCCAGGGCTACACACAGAGAAACCCTGTCTCGAAAAACAAAAA
CCAAAACAAAACAAAAAAAAGAAGTTGAGCTGGTGCTTCCATAGAGCCTT
TGCCCGCTATGGGCTAGTGTTCTTGGTACAGGAAGGTACTTCCAGAGCCT
CCAAAGGAGAAATGTAAACCCCCGCCCAGATACAGTGTTGTCCTGCTTTG
CAGAAATGCTAGGGGCATGGTGGTACCAATGCATGTGGGAGTGAACTGAC
CAATATCTAATTTGAAGTTAAGGTCCCCTTCCTCTTAAAAAACCTGGCCC
CAAGCGTTTAACAAATTTGTTAAAATTAAAAATGGACCGTGTTCCCCAAT
TTTTTTTAACCTTTTTAATTAACTAAAAAAAGTTGAATAATTTTTGTGGG
GTATAATTTTATATTACTTCCCCACCCCTTTAATTCCCCCCCCGCTTATA
TTACTTATCCCCATTTATTAACCTATATCATTTCCCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_h13.b1 MSMg01no111_h13.b1 CHROMAT_FILE:
MSMg01no111_h13.b1 PHD_FILE: MSMg01no111_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:50 2005
         (723 letters)



>mm_chr17_63639221_63640342
          Length = 1122

 Score = 1352 bits (699), Expect = 0.0
 Identities = 717/725 (98%), Gaps = 5/725 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgttctgcctctggtgtgtaagagtccctctttaagtggccctttctctcactggcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgttctgcctctggtgtgtaagagtccctctttaagtggccctttctctcactggcat 260

                                                                       
Query: 61  gcaattgccaatcatctacccggtcctacttagtaaaggctccatcaagtgggaaagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaattgccaatcatctacccggtcctacttagtaaaggctccatcaagtgggaaagaaa 320

                                                                       
Query: 121 tatttgtaaaagaacagatctagatagaattctgaccacagatcttcaaaacaaagcaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatttgtaaaagaacagatctagatagaattctgaccacagatcttcaaaacaaagcaac 380

                                                                       
Query: 181 agtgaaattttctatagccattttagtgacaaaatagtaaattatctttatggtcagaat 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgaaattttctatagtcattttagtgacaaaatagtaaattatctttatggtcagaat 440

                                                                       
Query: 241 tctactatatcgaacagtgccttgcctcccacctccctcctttgaaattaaggaaaaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctactatatcgaacagtgccttgcctcccacctccctcctttgaaattaaggaaaaaga 500

                                                                       
Query: 301 aaagaagcaatggcctgttt--aaaatcttacaaattatatcttacctggttctgaaaca 358
           |||||||||||||||||     ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagaagcaatggcctg---ggaaaatcttacaaattatatcttacctggttctgaaaca 557

                                                                       
Query: 359 aataagcttgggagactacttagcacccgaaacctccactgcttagctgccatgttgatc 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aataagcttgggagactacttagcacccgaaacctccactgcttagctgccatgttgatc 617

                                                                       
Query: 419 atctcaggaacagagtgtgtgccaagacatctgactcctcttctcagccccacaatgatt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 atctcaggaacagagtgtgtgccaagacatctgactcctcttctcagccccacaatgatt 677

                                                                       
Query: 479 ttgcagtaaatgctattggctgcattctcaaaacattccaaccgcctgccataacctttg 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 678 ttgcagtaaatgctattggctgcattctcaaaacattccaaccgcctgccataacttttg 737

                                                                       
Query: 539 ttgcaaccaccaaaattcacatcactgccacctctcttacaactttacccatccctgact 598
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 738 ttgcaaccaccaaaattcacattactgccacctctcttacaactttacccatccctgact 797

                                                                       
Query: 599 tctctgcttccatcctttccccaaagctacctgctcactgtgtatctttcaggttatctt 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tctctgcttccatcctttccccaaagctacctgctcactgtgtatctttcaggttatctt 857

                                                                       
Query: 659 tcaggatatacgatgagtacatgtcctaagtaatgtaaatcataatcctaaataattttt 718
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 tcaggatatacgatgagtacatgtcctaagtaatgtaaatcataatcctaaataattttt 917

                
Query: 719 gtggg 723
           |||||
Sbjct: 918 gtggg 922


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 723
Length of database: 1122
Length adjustment: 10
Effective length of query: 713
Effective length of database: 1112
Effective search space:   792856
Effective search space used:   792856
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)