Query= MSMg01no111_j03.b1 MSMg01no111_j03.b1 CHROMAT_FILE:
MSMg01no111_j03.b1 PHD_FILE: MSMg01no111_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:04 2005
(563 letters)
>mm_chr17_72440902_72441864
Length = 963
Score = 1029 bits (532), Expect = 0.0
Identities = 556/564 (98%), Gaps = 2/564 (0%)
Strand = Plus / Minus
Query: 1 aaacaattatatttcatttcttttgggctagagccttgctctctgggcagggctgctaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 aaacaattatatttcatttcttttgggctagagccttgctctctgggcagggctgctaga 870
Query: 61 cagagctcatcagctctcttcgcagtttgtatctcttggcttggaacctttgtcctacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 cagagctcatcagctctcttcgcagtttgtatctcttggcttggaacctttgtcctacaa 810
Query: 121 agctgtgataaatgcatcaagactccagtgttctctggatgccatgagggaggagcaagg 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 agctgtgataagtgcatcaagactccagtgttctctggatgccatgagggaggagcaagg 750
Query: 181 aataagcaggctcaggcctctggcaacattctcctagaatttagccttcaccatatgtag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 aataagcaggctcaggcctctggcaacattctcctagaatttagccttcaccatatgtag 690
Query: 241 gcaagatgctgtgccatgactctcctgggagatttctggccctacatactgacgttagaa 300
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 689 gcaagatgctgtgccatgactctcctgggagataccaggccctacatactgacgttagaa 630
Query: 301 aagagtggacatgttctcagcagtgtttctatcacattgaactaaaaggggaaaatgaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 aagagtggacatgttctcagcagtgtttctatcacattgaactaaaaggggaaaatgaga 570
Query: 361 gagaggatggatcgtggttcaaatgcaacagatgctcacagttctaatagaattttagta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gagaggatggatcgtggttcaaatgcaacagatgctcacagttctaatagaattttagta 510
Query: 421 tatttcttaaacagattatttttcaactaaatattt-ctctaaggcagctaacccaagac 479
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct: 509 tatttcttaaacagattatttttcaactaaatatttcct-taaggcagctaaccaaagac 451
Query: 480 ctgaagtgatgatgtttttgagatgatgtccactagtcactcctgtttccctgggaaaca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 450 ctgaagtgatgatgtttttgagatgatgtccactagtcactcctgtttccctgggaagca 391
Query: 540 ggtaggcagagcaccttgggtcag 563
||||||||||||||||||||||||
Sbjct: 390 ggtaggcagagcaccttgggtcag 367
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no111_j03.g1 MSMg01no111_j03.g1 CHROMAT_FILE:
MSMg01no111_j03.g1 PHD_FILE: MSMg01no111_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:04 2005
(538 letters)
>mm_chr17_72312429_72313366
Length = 938
Score = 917 bits (474), Expect = 0.0
Identities = 522/542 (96%), Gaps = 8/542 (1%)
Strand = Plus / Plus
Query: 1 catattctggcaacgtagatttattgagtttttcatgttaggcacgctactaggttcaga 60
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 catattctggcaacatagatttattgagcttttcatgttaggcacgctactaggttcaga 260
Query: 61 aagcagtggcatataagatagggacatgatctctgccctgtgtaccaattcaaatatatt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcagtggcatataagatagggacatgatctctgccctgtgtaccaattcaaatat--- 317
Query: 121 tttaaaaaa----cccattaaaaatgaaagaaaaggcacatgtttgcctcaagagcctca 176
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 -ttaaaaaaaaaacccattaaaaatgaaagaaaaggcacatgtttgcctcaagagcctca 376
Query: 177 aagacacattgtgggcacacagatagcccaggatggagggaagacttctttaaacagtga 236
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aggacacattgtgggcacacagatagcccaggatggagggaagacttctttaaacagtga 436
Query: 237 gcgaggagtggtatttagaagtgtggatggcaaaggattattattaatgtgcagagactt 296
||||||||||||||||| ||||||||||||||||||| | |||||||||||||| ||||
Sbjct: 437 gcgaggagtggtatttacaagtgtggatggcaaaggaagaatattaatgtgcagaaactt 496
Query: 297 gaaaatgcaaaggcttgaggtaaggagttttggcttggcacggaactttggcatggtacc 356
||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 497 gaaaatgcaaaagcttgaggtaaggagttttggcttggtaaggaactttggcatggtacc 556
Query: 357 accgagtgagaggagtctaggcagaggaggagaatgaatggtatgagatactgaagctga 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 accgagtgagaggagtctaggcagaggaggagaatgaatggtatgagatactgaagctga 616
Query: 417 ggttggacacatcacacataaccttaaagaaaggtcttactggagaacatagggaatgcc 476
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 617 ggttggacacatcacacataaccttaaagaaaggtcttattggagaacatagggaatgcc 676
Query: 477 ctaaaagccccaggaagccagggacatgaatagacttgtgtttaaaagaattgctcatgg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ctaaaagccccaggaagccagggacatgaatagacttgtgtttaaaagaattgctcatgg 736
Query: 537 gc 538
||
Sbjct: 737 gc 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
