Query= MSMg01no111_k24.b1 MSMg01no111_k24.b1 CHROMAT_FILE:
MSMg01no111_k24.b1 PHD_FILE: MSMg01no111_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:19 2005
(269 letters)
>mm_chr17_31003521_31004189
Length = 669
Score = 505 bits (261), Expect = e-147
Identities = 267/269 (99%)
Strand = Plus / Plus
Query: 1 tggttagtcaagtcccccgtttgttatgtgggtggtttaaatctcacgaagaatagaagg 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 tggttagtcaagtcccccgtttgtcatgtgggtggtttaaatctcacgaagaatagaagg 260
Query: 61 ttattgctgttgaggtctcgccccgactgactttttgtttttcctctcaagctcaggaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttattgctgttgaggtctcgccccgactgactttttgtttttcctctcaagctcaggaac 320
Query: 121 atatgaatcactttcggaatgattataactaaatgcatgtctaaacaaaagtgtttgatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatgaatcactttcggaatgattataactaaatgcatgtctaaacaaaagtgtttgatt 380
Query: 181 tttctcaagcttttgtgaaggaaactatatcagtagtcctacaagaagttatgcaagcag 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 tttctcaagcttttgtgaaggaaactatatcaatagtcctacaagaagttatgcaagcag 440
Query: 241 cagaaagagcagcttgtagtttcattagg 269
|||||||||||||||||||||||||||||
Sbjct: 441 cagaaagagcagcttgtagtttcattagg 469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space: 171600
Effective search space used: 171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no111_k24.g1 MSMg01no111_k24.g1 CHROMAT_FILE:
MSMg01no111_k24.g1 PHD_FILE: MSMg01no111_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:19 2005
(585 letters)
>mm_chr17_31152573_31153558
Length = 986
Score = 944 bits (488), Expect = 0.0
Identities = 515/524 (98%), Gaps = 3/524 (0%)
Strand = Plus / Minus
Query: 63 agttcaaactcgcccccaagtaactcgaagcccctattcagcaggaagtagtctaacaat 122
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 986 agttcaaactcacccccaagtaactccaagcccctattcagcaggaagtagtctaaggat 927
Query: 123 aatgctgcccctctttagactcctaattttttttcagggcacacttttctttcccctcta 182
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 926 aatgctgcccctctttagacttctaattttttttcagggcacacttttctttcccctcta 867
Query: 183 tcattttatctctcttacctagtattagggggctgaaagggggaaagaagagcccacaga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 tcattttatctctcttacctagtattagggggctgaaagggggaaagaagagcccacaga 807
Query: 243 gtagcaaaagactaggctacaagacggcttagcgttgccctttctttaagcctgatcctc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 gtagcaaaagactaggctacaagacggcttagcgttgccctttctttaagcctgatcctc 747
Query: 303 atgtgagtaccccacaaaaagacttggggg-aatcactggatccccttgttctttccaaa 361
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 746 atgtgagtaccccacaaaaagacttgggggaaatcactggatccccttgttctttccaaa 687
Query: 362 gtggccacactgaattcccctcaactcagctttgcactgttgcctgccactttcattggc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gtggccacactgaattcccctcaactcagctttgcactgttgcctgccactttcattggc 627
Query: 422 aaattgag-ggaaaatggcgtagcctaatttactgtggctgtctgagcctaggctttgac 480
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aaattgagcgg-aaatggcgtagcctaatttactgtggctgtctgagcctaggctttgac 568
Query: 481 gctaatcacaccagcgcgtgatgaacgtttgtccacctgggcctgggtgatgccactgcg 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gctaatcacaccagcgcgtgatgaacgtttgtccacctgggcctgggtgatgccactgcc 508
Query: 541 gtgggattatgaacacacgtggttctacatgtctcaggctctgg 584
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gtgggattatgaacacacgtggttctacatgtctcaggctctgg 464
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 986
Length adjustment: 10
Effective length of query: 575
Effective length of database: 976
Effective search space: 561200
Effective search space used: 561200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
