Query= MSMg01no111_o14.b1 MSMg01no111_o14.b1 CHROMAT_FILE:
MSMg01no111_o14.b1 PHD_FILE: MSMg01no111_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:49 2005
(775 letters)
>mm_chr17_67946706_67947880
Length = 1175
Score = 1278 bits (661), Expect = 0.0
Identities = 741/775 (95%), Gaps = 16/775 (2%)
Strand = Plus / Plus
Query: 4 ggaattca-ggcccatacctaaccattataaaagcaacctacagcaaaccagtagccaac 62
|||||||| ||||||||||||| ||| |||||||||| |||||||||||||
Sbjct: 214 ggaattcaaggcccatacctaaacatgataaaagcaa----------accagtagccaac 263
Query: 63 attaccttaaatggtgagaagctggatgcaatcccactaaaatcagggactagacaaggc 122
|| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 264 atcaaagtaaatggtgagaagctggaagcaatcccactaaaatcagggactagacaaggc 323
Query: 123 tgcccactttctcaccacctattcaacattgtacttgaagtcctagccagagcaattcga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgcccactttctcaccacctattcaacattgtacttgaagtcctagccagagcaattcga 383
Query: 183 caacaaaaggagatcaagggggatacaaattggaaaggaagaagtcaaaatatcactttt 242
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caacaaaaggagatcaagggg-atacaaattggaaaggaagaagtcaaaatatcactttt 442
Query: 243 tgcagatgatatgatagtatatatgagtgaccctaaaaattccacctgagctagtttcta 302
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 443 tgcagatgatatgatagtatatataagtgaccctaaaaattccacctgagctagtttcta 502
Query: 303 acttcttcatgtgctaccacaagcctggaagtaacagggtccacctaccacgagctacaa 362
||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 503 actccttcatgtgctaacacaagcctggaagtaacagggtccacctaccacgagctccaa 562
Query: 363 ctccagtcatcccatcccttcaaagactctgctatttgcagtaacgcacagtgatagagg 422
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cttcagtcatcccatcccttcaaagactctgctatttgcagtaacgcacagtgatagagg 622
Query: 423 agcacagaggctagtcctggccagtgcacagtcaggataccaactttgtagagaagttcc 482
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 623 agcacagaggctagtcctggccagtgcacagtcaggataccgactttgtagagaagttcc 682
Query: 483 tgttggtcacaaagtggtggtttgcttgttcttgacttggaatggggaacggggagtcga 542
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 683 tgttggtcacaaagtggtggtttgcttgttcttgactcggaatggggaacggggagtcca 742
Query: 543 tgtgaaaactccagggcctgcagtaccagtaaaatccagaatcccagagctccccaaaca 602
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 743 tgtgaaaactccagggcctgcagtaccagtaaaatccagaatcccagagatccccaaaca 802
Query: 603 tgtccatcatgaaaggcttccttaccaatgcccccactgaaagcactccccaacattgac 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tgtccatcatgaaaggcttccttaccaatgcccccactgaaagcactccccaacattgac 862
Query: 663 c--actgaaagtcctccctatctatggcccactgggagccatggcttggtcgacactgta 720
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 863 cccactgaaagtcctccctatccatggcccactgggagccatggcttggtcgacact--a 920
Query: 721 ctaaatctggtgaatagcttttaatgatatcaacctgctctgaggaactctctgg 775
||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 921 ctaaatctggtgaatagcttttaatgaaatcaacctgctctgaggaactctctgg 975
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 775
Length of database: 1175
Length adjustment: 10
Effective length of query: 765
Effective length of database: 1165
Effective search space: 891225
Effective search space used: 891225
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no111_o14.g1 MSMg01no111_o14.g1 CHROMAT_FILE:
MSMg01no111_o14.g1 PHD_FILE: MSMg01no111_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:50 2005
(753 letters)
>mm_chr17_68007626_68008777
Length = 1152
Score = 1255 bits (649), Expect = 0.0
Identities = 706/725 (97%), Gaps = 3/725 (0%)
Strand = Plus / Minus
Query: 1 tttcctttgctacagccagttgattccatccacggatccaatctgaggtcatatgcaact 60
||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||
Sbjct: 923 tttcctttgctacagccagttaattccatcca-ggatccaatctgaggtcataagcaact 865
Query: 61 tctggaaatgtccctaaggacttttatgctagaattttgagccttgcccggggcctccca 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 864 tctggaaatgtccctaaggacttttatgctagaattttgagccttgcctggggcctccca 805
Query: 121 caacatacatcctgagtgtgtctggagtcgccccactggggtgaataacattgtttttcc 180
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 804 caacatacatcctgagtgtgtctggagtcaccccgctggggtgaataacattgtttttcc 745
Query: 181 cactgtgacatttatggcaactgaggattagatctaaca-gagacatctgggttggaatc 239
||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 744 cactgtgacatttgtggcaactgaggattagatctaa-aggagacatctgggttggaatc 686
Query: 240 cacagttctcttatgtgaacagggctcggcttccccgttcacatccagaaacaaagctcg 299
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 685 cacagttctcttatgtgaacagggctcagcttccccgttcacatccagaaacaaagctcg 626
Query: 300 cacagcccacacctgcagaacagaatggcatctgtttctcctttcaaatattctcgtgtt 359
||| ||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||
Sbjct: 625 cacggcccacacctgcagaacagaatggcgtctgtttcttctttcaaatattcttgtgtt 566
Query: 360 tttgtttcatttgtttattgttattattggctatttttctggtatttagtcagaggctcc 419
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttgttccatttgtttattgttattattggctatttttctggtatttagtcagaggctcc 506
Query: 420 ccagacagggcacaccccaaaccaggaaagtctcaagttgcttgcacactaaaggacaaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccagacagggcacaccccaaaccaggaaagtctcaagttgcttgcacactaaaggacaaa 446
Query: 480 ataaaagtaggaagcattcctatgtgggaaagtgcttagggaaacaggaacctccaagtt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ataaaagtaggaagcattcctatgtgggaaagtgcttagggaaacaggaacctccaagtt 386
Query: 540 tactgacagaccagctactatggaggccaatggacagagaggctcctgggcaaaaaacta 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tactgacagaccagctactatggaggccaatggacagagaggctcctgggcaaaaaacta 326
Query: 600 gggacttcagaaccacttggcttacagaatctattaaaatacatagccaagagctgcaat 659
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 325 gggacttcagaaccacttggcttacagaatctattaaaatacacagccaagagttgcaat 266
Query: 660 ggggtgaatggtcatgagatggggacacaagttgtcagtgtgaagaggccattcctgaat 719
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 ggggtgaattgtcatgagatggggacacaagttgccagtgtgaagaggccattcctgaat 206
Query: 720 gtcat 724
|||||
Sbjct: 205 gtcat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 753
Length of database: 1152
Length adjustment: 10
Effective length of query: 743
Effective length of database: 1142
Effective search space: 848506
Effective search space used: 848506
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
