BAC Information

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BAC

Clone NameMSMg01-112P21
Chromosome17 (Build37)
Map Location 21,774,008 - 21,774,488
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807
Downstream geneZfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112P21.T7 (MSMg01no112_p21.b1)MSMg01-112P21.TJ (MSMg01no112_p21.g1)
ACCAG325255AG325256
length744746
length of high quality
(start - end)		401 (333 - 733)481 (77 - 557)
definitionCHROMAT_FILE: MSMg01no112_p21.b1 PHD_FILE: MSMg01no112_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:18 2005CHROMAT_FILE: MSMg01no112_p21.g1 PHD_FILE: MSMg01no112_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCCCGAGCTGCGCGG
AATTCACTCCTAGTTACTCCACAATCTCGGGGTGTAATAGTGGGGTGATG
GGCAAGCAACGAACCAGGAGCTGTCACGCCATATCAGGTGCTGAAACGTC
ACGCTGCGGGTTATAAAAGCAGCGCCATTTTCCCGGTTTGGGATCTTCCT
GAGAAGCAAGCAATAAAGCTTTTGCCGCGGAAGATTCTGGTTTGTTGCGT
CTTTCTTGCCGGTCAAGCGGGACGCAATAAGTGGCGCCGAAGAACCCGGG
AACTGTCATCACACCGGCGCAAGGTATTATTCCTCGTTCGCGGGGCAGAA
TCAGAACCGTGGGACAAAAGGCTCTACAAGGTACGTACAATCTTGAAATT
TCTCCAGAGTTAGAAGCCCTTTTGATTGTTTGCACGGCGATTACACTTTT
CCTTTCGGTTTCGTTTTGTTTCCACCACTGGAACTGCTGACTGGTTCTTA
GTCGTGGTCAGGCCTGGACAGTGGCAGTATGGGAATCTCCCATTCTATAG
TAGTGGCCTTACGCTAGGTCCTGAAGCAGTGTGGCCTAAAAATCGCCACT
AAGACCTTAGAGGGATTTGTCAGAGAGATAGACCGTGTCGCACCATGGTA
TGCTTGCTCAGGGTCATTAACTGTCGCCTCTTGGGACAAACTGAAAGGAG
ATCTAGTTAGGGAACAGCAGAAAGGCAAACTTAAAGCAGGGATN

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGTCAATCAGAATTACAAAGAG
AAACCACAGTCTTGGAGAGAAAGATTGAAATTCCTGGAGGCAAGCAGAAA
TTCCTTTTGAAGTACTGATGGGGAAAATCTTTGCTCCAAACTTTATAATT
AAATAATATAGCTGCCATTGCCAGCCATTATACCCTCATGGAATTAATGG
AGACTCCAGAACCCTCCATCAGCCATGATGAAATGGTAATTGCCCCAGTC
TTACATAGCTGCTTATTCTTAGTACTTTCTCAACAGTTATGGGTCTCTGC
ATTATCTACCCCCTACTGCAAAAAGAGTCTTCCTTCACCGTTTTACAAAC
TGGTCATTAGAAACATGACTATTTGGATGGCTGATTAATAACATGTTCCT
TAAGAAAACATCAATAGCTTCTGTCCTTGGACTTATACTTCCAAATCCTT
TGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTT
TGTTTTGTTCCGTTTTACTATGTTACGAATTTCCCTCTTNNCTANCTCTT
CATATCCATTCCACTTACAACCTGTTTATCGGCTTTTCCTATGGTGACAG
CTTTACCCCAGCGCCCCCCTCTTGCTTTACTCTTGTTCTCATGCCTGCCT
CCTGCTCTTCCGACATATTATTTTTATCCCCCCCCCCTTGCTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_p21.g1 MSMg01no112_p21.g1 CHROMAT_FILE:
MSMg01no112_p21.g1 PHD_FILE: MSMg01no112_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:18 2005
         (481 letters)



>mm_chr17_21773808_21774687
          Length = 880

 Score =  905 bits (468), Expect = 0.0
 Identities = 478/482 (99%), Gaps = 3/482 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagtcaatcagaattacaaagagaaaccacagtcttggagagaaagattgaaattcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagtcaatcagaattacaaagagaaaccacagtcttggagagaaagattgaaattcctg 260

                                                                       
Query: 61  gaggcaagcagaaattccttttgaagtactgatggggaaaatctttgctccaaactttat 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 gaggcaagcagaaattccttttgaagtactgatgggg-aaatctttgctccaaactttat 319

                                                                       
Query: 121 aattaaataatatagctgccattgccagccattataccctcatggaattaatggagactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aattaaataatatagctgccattgccagccattataccctcatggaattaatggagactc 379

                                                                       
Query: 181 cagaaccctccatcagccatgatgaaatggtaattgccccagtcttacatagctgcttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cagaaccctccatcagccatgatgaaatggtaattgccccagtcttacatagctgcttat 439

                                                                       
Query: 241 tcttagtactttctcaacagttatgggtctctgcattatctaccccctactgcaaaaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcttagtactttctcaacagttatgggtctctgcattatctaccccctactgcaaaaaga 499

                                                                       
Query: 301 gtcttccttcaccgttttacaaactggtcattagaaacatgactatttggatggctgatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtcttccttcaccgttttacaaactggtcattagaaacatgactatttggatggctgatt 559

                                                                       
Query: 361 aataacatgttccttaagaaaacatcaatagcttctgtccttggacttatacttccaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aataacatgttccttaagaaaacatcaatagcttctgtccttggacttatacttccaaat 619

                                                                       
Query: 421 ccttt--gttttgttttgttttgttttgttttgttttgttttgttttgttttgttttgtt 478
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 620 cctttttgttttgttttgttttgttttgttttgttttgttttgttttgttttgttctgtt 679

             
Query: 479 tt 480
           ||
Sbjct: 680 tt 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 880
Length adjustment: 10
Effective length of query: 471
Effective length of database: 870
Effective search space:   409770
Effective search space used:   409770
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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