Query= MSMg01no113_g13.b1 MSMg01no113_g13.b1 CHROMAT_FILE:
MSMg01no113_g13.b1 PHD_FILE: MSMg01no113_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:49 2005
(597 letters)
>mm_chr17_76844691_76845686
Length = 996
Score = 1093 bits (565), Expect = 0.0
Identities = 586/593 (98%), Gaps = 1/593 (0%)
Strand = Plus / Plus
Query: 5 gaattctccattatactcaattcacctacatacctgctaggtactgtcatcttccacatt 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccattacactcaattcacctacatacctgctaggtactgtcatcttccacatt 264
Query: 65 attactgataattcagtatcttaaggactggtgatcccatttcacctttaaatttacttc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attactgataattcagtatcttaaggactggtgatcccatttcacctttaaatttacttc 324
Query: 125 acacagtgtgatagactctcttgaatgataatcctcccaattctccaatcttgaaactca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acacagtgtgatagactctcttgaatgataatcctcccaattctccaatcttgaaactca 384
Query: 185 gatttgaacctacattcttcttttgtactttttaaaaaaaaatctttttaactgtttctg 244
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 385 gatttgaacctacattcttcttttgtacttttt-taaaaaaatctttttaactgtttctg 443
Query: 245 ggctgtggctgttccatttgtaaattttcaatgctttctttgtatcatttacactactgt 304
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggctgtggctgttgcatttgtaaattttcaatgctttctttgtatcatttacactactgt 503
Query: 305 caccaaagggtaattccattcccacagaatttagtatggtttctatgcatcctccttatc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caccaaagggtaattccattcccacagaatttagtatggtttctatgcatcctccttatc 563
Query: 365 attttgtgaccatgagcaaaagctattagtatcacccagaaaatcaaaggtctgacagac 424
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 564 attttgtgaccatgagcaaaagctattagtatcacccagaatatcaaaggtctgacagac 623
Query: 425 aagtcagggtgaagtgtttatagccacctactcattatttcaaactacattttatatcta 484
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 624 aagtcagggtgaagagtttatagtcacctactcattatttcaaactacattttatatcta 683
Query: 485 agacctcatttggtatagacatcttgttcaacaacaactcaatatttcatgttgtttgct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agacctcatttggtatagacatcttgttcaacaacaactcaatatttcatgttgtttgct 743
Query: 545 cataagtactttctcttttcaactatataataaaagctaattttatttcttgt 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cataagtactttctcttttcaactatataataaaagctaattttatttcttgt 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 996
Length adjustment: 10
Effective length of query: 587
Effective length of database: 986
Effective search space: 578782
Effective search space used: 578782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_g13.g1 MSMg01no113_g13.g1 CHROMAT_FILE:
MSMg01no113_g13.g1 PHD_FILE: MSMg01no113_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:49 2005
(496 letters)
>mm_chr17_76940592_76941487
Length = 896
Score = 661 bits (342), Expect = 0.0
Identities = 371/388 (95%), Gaps = 12/388 (3%)
Strand = Plus / Minus
Query: 121 gtactacaggtgatctctgtcatatacagtagatgatc------------tttgtttgtt 168
|||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 896 gtactacaggtgatctctgtcatatacagtagatgatctttgtttgtttgtttgtttgtt 837
Query: 169 tgcctgagacagggcttctctgtatagcccagcggtcctggaactcactctgtagaacag 228
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 836 tgtttgagacagggcttctctgtatagcccggcggtcctggaactcactctgtagaacag 777
Query: 229 gctggcctcgaactcagaaatacacctgcctctacctctcaagtgctgggattaaagacg 288
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 cctggcctcgaactaagaaatacacctgcctctacctctcaagtgctgggattaaagacg 717
Query: 289 tgcgccaccactgcctggttttatagtgggtgttctaattaatgctctaactctgttcat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tgcgccaccactgcctggttttatagtgggtgttctaattaatgctctaactctgttcat 657
Query: 349 agtttcagtaggcaagggattgactctcatacataaaataaaaggcaaatttaccactga 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 agtttcagtaggcaagggattgactctcatacataaaataaaaggcaaatttaccactga 597
Query: 409 tctcatgaggctaaagctaggagatacaatagatacctggaatatttgaatatgtaagag 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tctcatgaggctaaagctaggagatacaatagatacctggaatatttgaatatgtaagag 537
Query: 469 gagttgtttagaaataggtgagtattcc 496
||||||||||||||||||||||||||||
Sbjct: 536 gagttgtttagaaataggtgagtattcc 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
