BAC Information

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BAC

Clone NameMSMg01-113K06
Chromosome17 (Build37)
Map Location 89,853,380 - 89,853,531
singlet/doubletsinglet
Overlap genenone
Upstream geneFoxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr, LOC100043904
Downstream geneLOC100043906, Nrxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113K06.T7 (MSMg01no113_k06.b1)MSMg01-113K06.TJ (MSMg01no113_k06.g1)
ACCAG325728AG325729
length694703
length of high quality
(start - end)
151 (63 - 213)250 (119 - 368)
definitionCHROMAT_FILE: MSMg01no113_k06.b1 PHD_FILE: MSMg01no113_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:08 2005CHROMAT_FILE: MSMg01no113_k06.g1 PHD_FILE: MSMg01no113_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXCTATTTCCAGAGGAGCGCGGAATTCAAC
AGTGGGCCTAGACCACTAGGGATGAGAAGCAGAAACATTATCTGGTACGA
GACAGCCAAATAGTCATGATAGGCAGGAGCTCCAAGAGGTGAGACCAGTC
ATGACAGGCTTGAGAGACGTATGTTAGGCACTATGATACACACACACACA
CGCGCACACACACGCGCACACGGATATATATATATATATATACTATGATA
CACACATATATATATAATGATACATACATACATATATATATATACACACA
CACACACACACACACGTATATATATGTATGTATATAAAAATATATTGCTC
CCTATACAGACTGCCATAATAGACTATATTATAGTAATGATGAATTCTGA
CGAACATGACCGACCCCAGACTATCCTATAGACAGAGAGACAACTAAGAA
CAAATGTATCTACTTCTTTAAAGAAAAAAGGATCAAGAGGGATCAGCAGA
GCTATTGTGACATCTGTAAGGCCAGATGTGGTAACACCAGCCATAACTAA
CAAATAGCACACAGCTACTGTCAGGAGCTGACGTAGCTCTGTAACAAACA
GAGACAAAGTCGCTCTAATCAGGCGTTACTATGTGAAAAAAAAATGAGCC
GAGCATGATTAACGCATGTTGTATATAGAATGTGTAAGCTCTTT
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGGTTAATGACACAGATTTGCCTTTGACAAT
GTCATAACAGAAACCTCATTGAAACTAAGGTAATAAATACATATAGATGC
ACACAGAAGACAAGATAGAGAAGAAAAATATCCCATATCATATTGTAGAC
GAAACACTAAATATACCGAGCAGGGAAATTATATTAAAATCTACAAGAGA
AAAATACGAATAACAATAAAGGGGACTTATTAGACATTTTATTTCTCTAT
AGAAACTATACAATCAGGAAAATCCTGGATCAATACACTTCAAGTTCTAA
AGATCACAATAGTCATCCACGATTTCAGTACCCAGAATAATGAAGTACTA
TAGTTTAAACGGGATACAAACAAACAAAAACAAAATGCTCTCCATTAGCC
TAATAGAACATTATATCCAACACCAATAAAAACCAACCTAAACAGCATAC
TGGAAGCACAAAATGAGAAGAGGAATAAGTACAACCAAGATACTCTAGAA
CGAAAACACATAAAGATATCACGCATTGAAAACCAAACCAGGACTGGGAG
TGGGGACCACGCAAAAAATAATCAATTGGCACACATGCACACATACACAC
ATACAGGCAAACGGGGACACAACGGAACAAAAGGGGGGTAGAAAGGGGTA
GGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_k06.b1 MSMg01no113_k06.b1 CHROMAT_FILE:
MSMg01no113_k06.b1 PHD_FILE: MSMg01no113_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:08 2005
         (151 letters)



>mm_chr17_89853180_89853731
          Length = 552

 Score =  248 bits (128), Expect = 2e-70
 Identities = 146/152 (96%), Gaps = 1/152 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccactagggatgagaagcag-aaacattatctggtacgagacagccaaatagtcatgata 59
           |||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||
Sbjct: 201 ccactagggatgagaagcagaaaacattgtctggtaggagacagccaaatagtcatgata 260

                                                                       
Query: 60  ggcaggagctccaagaggtgagaccagtcatgacaggcttgagagacgtatgttaggcac 119
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 ggcaggagctccaagaggtgagaccagtcatgacaggcttgagaaacgtatgttaggcac 320

                                           
Query: 120 tatgatacacacacacacacgcgcacacacac 151
           |||||||||||||||||||| | |||||||||
Sbjct: 321 tatgatacacacacacacacacacacacacac 352


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 552
Length adjustment: 8
Effective length of query: 143
Effective length of database: 544
Effective search space:    77792
Effective search space used:    77792
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)