BAC Information

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BAC

Clone NameMSMg01-114D10
Chromosome17 (Build37)
Map Location 29,535,361 - 29,535,921
singlet/doubletsinglet
Overlap genenone
Upstream geneFkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2
Downstream genePim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1, LOC100042885, LOC100042888, Zfand3, Btbd9, EG623169
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114D10.T7 (MSMg01no114_d10.b1)MSMg01-114D10.TJ (MSMg01no114_d10.g1)
ACCAG326151AG326152
length705724
length of high quality
(start - end)
564 (44 - 607)340 (73 - 412)
definitionCHROMAT_FILE: MSMg01no114_d10.b1 PHD_FILE: MSMg01no114_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:51 2005CHROMAT_FILE: MSMg01no114_d10.g1 PHD_FILE: MSMg01no114_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACGTTTCCTTTCTCTTTCCTTTCCCTTTTCAATATTAGACTTTAAAC
AGATTATCATTAAAAACAGTGCAAGGCCGACGATACGGCGCGCCGCAGTG
CAAGTCGGAAAAGTTAAAAAAAGAAGAAGAACAAGAAAAAGAAAAAAGGT
GATATTAACACCCCAAACCAGTGTTTGGTGAATAATCACTTCAGGACCGG
GCCAGTAGCTCCGTGGCAGGGAGCGTGCCTGGTATTCAAAAGGCTGAGGT
TAAACCCCTGCAGTAAACAAAACTCGCTGGGGGTTCTTTGAGACACAGTC
CCAGTAATTAGACTAGCTTGGGACTTCCGACCCTCTGGCCCACACCTTAA
ATGCTGGGATCGGTATTCACCACCAATACTGGGTTCACTTGGCAAGGGGT
CTGCCGTCCGGGCTTCATGCACGCTAACCAGCAGCCATACCTGCAGTCCT
TCATGCACATACCCGGGGGTGTTTGTTCGTTGGATCGAACTCGGGCTTGG
TGGCAAAAAGCCTTACCTGCCTTACCCGCTGAGCCATCTTGCCAGCCCCT
TTTTGCCCTTTTTTTGGGTACTTTTGAGACAAGGTCTCACTCCATAGCTC
TGACTGGCCTGGGAATTTGCTCTAAAGATCAAGAGACCCTCCAACCTGTC
ATCCT
TTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTATCTAGATCTGCACCTCATTTTTTG
ATCGGGTCATTTTCTTGGTATTTGATAGTTTGTTGAGTGCTTTCTATATG
CTGGATGTTAGCCCTCTATGGGATGTGCCACTGGTCTCTTGTCCCATTCT
GCTGTCTGAATGACAGTGTCCTTTGCCCTACAGAAGCGTCTCATTTTCAT
AAGATCCCACTTATGAGCTGTTGGTCTTAGTGCCTGTGCTAGCAGTGTTC
TGTTCAAAAAGTTTCCCTGTGCCAAGGAGTTCAGAGCTATTCCAGTTTCC
TCTTCTACGAAGTTTGGTGGACTTGAATCTATGTGGAGGTCTTTGATCCG
TTTGGAGTTTTGCGCACAGCGATAAGCGTAGCTCTATTTGGTTTCTTCTA
CACGGAGTTGTCCGGCTTGACCAGCACGGCTTGTTAAAGATGCTGTCTGT
CTTTTTTCCAGTGTGTTTCTGGCTTTTTCATTTAAAATATCAGGCATCCC
TAGGTGTGCGGCATTATGCTTTATTCTTCAATTTGACTCTACTGATCCAC
ATGTCCGTTTTTGTGCTAACCTATTATTATGGCTCTACAGTACATCTTGA
AACTGGGAATGGCGATATCTCCTGCAGTTTCCTGTATATTCACGTTCGCT
TCACCTATCTTGTCTCTCCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_d10.b1 MSMg01no114_d10.b1 CHROMAT_FILE:
MSMg01no114_d10.b1 PHD_FILE: MSMg01no114_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:51 2005
         (564 letters)



>mm_chr17_29535158_29536121
          Length = 964

 Score = 1038 bits (537), Expect = 0.0
 Identities = 555/561 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacgtttcctttctctttcctttcccttttcaatattagactttaaacagatta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacgtttcctttctctttcctttcccttttcaatattagactttaaacagatta 263

                                                                       
Query: 64  tcattaaaaacagtgcaaggccgacgatacggcgcgccgcagtgcaagtcggaaaagtta 123
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 264 tcattaaaaacagtgcaaggccgacgatacagcgcgccgcagtgcaagtcggaaaagtta 323

                                                                       
Query: 124 aaaaaagaagaagaacaagaaaaagaaaaaaggtgatattaacaccccaaaccagtgttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaaaaagaagaagaacaagaaaaagaaaaaaggtgatattaacaccccaaaccagtgttt 383

                                                                       
Query: 184 ggtgaataatcacttcaggaccgggccagtagctccgtggcagggagcgtgcctggtatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggtgaataatcacttcaggaccgggccagtagctccgtggcagggagcgtgcctggtatt 443

                                                                       
Query: 244 caaaaggctgaggttaaacccctgcagtaaacaaaactcgctgggggttctttgagacac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caaaaggctgaggttaaacccctgcagtaaacaaaactcgctgggggttctttgagacac 503

                                                                       
Query: 304 agtcccagtaattagactagcttgggacttccgaccctctggcccacaccttaaatgctg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agtcccagtaattagactagcttgggacttccgaccctctggcccacaccttaaatgctg 563

                                                                       
Query: 364 ggatcggtattcaccaccaatactgggttcacttggcaaggggtctgccgtccgggcttc 423
           ||||| ||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct: 564 ggatccgtattcaccaccaatactgggttcacttggcaaggggtctgccatctggacttc 623

                                                                       
Query: 424 atgcacgctaaccagcagccatacctgcagtccttcatgcacatacccgggggtgtttgt 483
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atgcatgctaaccagcagccatacctgcagtccttcatgcacatacccgggggtgtttgt 683

                                                                       
Query: 484 tcgttggatcgaactcgggcttggtggcaaaaagccttacctgccttacccgctgagcca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcgttggatcgaactcgggcttggtggcaaaaagccttacctgccttacccgctgagcca 743

                                
Query: 544 tcttgccagcccctttttgcc 564
           |||||||||||||||||||||
Sbjct: 744 tcttgccagcccctttttgcc 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)