BAC Information

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BAC

Clone NameMSMg01-114G18
Chromosome17 (Build37)
Map Location 34,040,390 - 34,041,008
singlet/doubletsinglet
Overlap geneLOC100042970
Upstream geneCyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219
Downstream geneBC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114G18.T7 (MSMg01no114_g18.b1)MSMg01-114G18.TJ (MSMg01no114_g18.g1)
ACCAG326307AG326308
length1,640744
length of high quality
(start - end)
---619 (74 - 692)
definitionCHROMAT_FILE: MSMg01no114_g18.b1 PHD_FILE: MSMg01no114_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:06 2005CHROMAT_FILE: MSMg01no114_g18.g1 PHD_FILE: MSMg01no114_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTTACGCCCCCCCGCACCATTTATCTTCCTCCCCTCTAATCACTAAAAA
CGATAGTTGTGGCACCCCGCGTCGCGGTCTCGAAACTGCCGCACAGCGTG
ATACGCGCCCCCGCCCAACGCGTCTCCTCCGTCTCCCCGTCTCCCTTACG
TGAACATCATACGTCGTACATAAAACTCCGCTACGAACAGACGAAACGAT
GCTTCGCACTAACTAATACACCCCATACAAACAGCTTTCTAACAATGCTT
TCAAGTATTATGGCACCGGCTGCCGAATAAGCGCATGACGCGCGTCGAGT
GCAAATAATAATCGCGCAGCTTCGGTCGTAGGATAAACGTATATCCGTAA
CGGTGAATAACACTAAACAAGTACGCATCCATATAAAAGAGTCGCGCCCC
TCTCAAAACTACGTTAAACCTCTAATGTCCGATTTAATTCATCTTCACAC
GAGCTGACAATATCGCTCTATATACACCCGCCCGTGTGTATGATGATCCC
CGCGCTCGCCCGCCATCTTATCCTCGCGACCCCGCTCTATCGGAGATTAC
TATACCGCCGCGCCCTCATATAATACTCCCCGCCCGCCTTCCCACACGAA
TTACGCCACACCAGTCGCGCCGACCATCGCTAATCTCGGCTTCGCGCGTT
ATAGCAAGTCATACGCCTCAACGCAGCGCGTCCGATGTCGTCACCCTCGG
CCGTTTTAATTTACGCGTGATATACGCCGACTCCACACATCGCCCGCCGG
CGTTATATCGCCGCGCGCATTGCGAGATCGCGTACGCTCTTTCATCGCGG
GCGTCAGCTCTACCGACGTCGCAGACGTATAGCCTCTACGGTACTCTATC
AACATCAGCGACGCGCGCCTGTAATTCGGAACTCGCGTTCGCGCGCGTTA
ACTAACACGCCCGCGCGTATCGCTACAACTCGAATACGCGCCCGTAATAG
CGTCGTAATCCTGCTACCGTTCTTGTACGCTCCCGATAGACGATTCGACG
CGCACACCATAATTTCTGTANACACGGAGCGCGTCGATTCGACGCCGGCG
ACGAGCGCCGTATATTAATACACCGTCTTCCTCGCGTTNANACACGTTTN
ATATCCTCAATATAGCAACCGCTCTNATCCGCGCAGCGATGTATCGCGCG
CCATCCGACGCTCGAGATAACTCGAGTCTCGCTCGCATCTCGATATCCGC
GTCGTCCATCGCGATTATTACTCACAGACGTTCGATCTGCGAATGATATC
GCGTCTCTATGTGNCCGCAAGTNTAACGCCGTGCGTCTANTCNCGCAGCA
GTGTTTGTATANATATATTATANGTACCAACGACNCGCNCAAAGTGCAGA
GCTACTTACCTAGTTGGANANATATACTCGCGACGGAGTAGTACTACGAC
NTNANTGACGACAGANACGGAGCGACGCCGTCGCGACACACTCGTCAAGN
ATGCTCAGAAAGTCGACTGTAGCNCGCNCGCCACGTGTTTACTGTCGCAG
TGACGTCTCGCGTCCGATTACGAACCCACCNACTTGCGCGTGACNATGTT
CCTAGTCGTCGCGATCCTTTTNGAGTCGCGAGACCCAGCGCACGCATGTA
ATGAATCATCACGCATCACGATCTCGCACCAGCGACGTNN
ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGAGACTTTTCAGAGGGTGTATACAT
GCTAGAGCCCATGAGGGTGTGGTGGGTTGTTAGGCTTTTGTCATTGGGGA
AGTTGTTTTCAGTTTGTTAGCAACAAAAGGAAAGAAGTGAGGATTTCCCT
AATTCCTTTTCCTCCTCTCTCCTTGTTTCTCTTATCTCGGGTTAGGGGGT
GACACCAAAGTGTGGGAAAAAGAACCCACAAAGTAGCAAAGACCAGGTAC
ACCCTTCCATGGGGAGACACCTTGCTTTCAGTTTAACAGGTGAGTTTACA
GGGTGTCTTTGGGCACCTTGGATTGGGTTATAATATGGCAAAGTGAGGCA
GAGCCACTAGAATCCAGAGATTTCAGGAGATCATCCCAAAAACTAAGGGA
GAAAGGCGATCTTGCTTAGCTGAGAGACTCTGAGCACAGGACATCTTTCC
TTTCCCGTGTCCCCATAACTGTCTCTTCTGTCTTGCAGCAAACTTACCGT
GGTTCCCCAGAGCTGGGCATGAGATTGAAACACTGAGCCCTTTAATGCTT
GAAGCCCTTGGTGTCTGTGGTGGCCACCCTCCTGAAGCCAGACCTCCCCC
TTCCTAACCCCTGTAATTGCAGTCTCCTGTGACTAATGTGCACCAAGGAC
AAGCTTCACCAGGGCCTGTTTAGAATTTCCCTCCTCCTTTGGNG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_g18.g1 MSMg01no114_g18.g1 CHROMAT_FILE:
MSMg01no114_g18.g1 PHD_FILE: MSMg01no114_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:06 2005
         (619 letters)



>mm_chr17_34040190_34041208
          Length = 1019

 Score = 1183 bits (612), Expect = 0.0
 Identities = 618/620 (99%), Gaps = 2/620 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggagacttttcagagggtgtatacatgctagagcccatgagggtgtggtgggttgttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggagacttttcagagggtgtatacatgctagagcccatgagggtgtggtgggttgttag 260

                                                                       
Query: 61  gcttttgtcattggggaagttgttttcagtttgttagcaacaaaaggaaagaagtgagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttttgtcattggggaagttgttttcagtttgttagcaacaaaaggaaagaagtgagga 320

                                                                       
Query: 121 tttccctaattccttttcctcctctctccttgtttctcttatctcgggttagggggtgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttccctaattccttttcctcctctctccttgtttctcttatctcgggttagggggtgac 380

                                                                       
Query: 181 accaaagtgtgggaaaaagaacccacaaagtagcaaagaccaggtacacccttccatggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accaaagtgtgggaaaaagaacccacaaagtagcaaagaccaggtacacccttccatggg 440

                                                                       
Query: 241 gagacaccttgctttcagtttaacaggtgagtttacagggtgtctttgggcaccttggat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagacaccttgctttcagtttaacaggtgagtttacagggtgtctttgggcaccttggat 500

                                                                       
Query: 301 tgggttataatatggcaaagtgaggcagagccactagaatccagagatttcaggagatca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggttataatatggcaaagtgaggcagagccactagaatccagagatttcaggagatca 560

                                                                       
Query: 361 tcccaaaaactaagggagaaaggcgatcttgcttagctgagagactctgagcacaggaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcccaaaaactaagggagaaaggcgatcttgcttagctgagagactctgagcacaggaca 620

                                                                       
Query: 421 tctttcctttcccgtgtccccataactgtctcttctgtcttgcagcaaacttaccgtggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctttcctttcccgtgtccccataactgtctcttctgtcttgcagcaaacttaccgtggt 680

                                                                       
Query: 481 tccccagagctgggcatgagattgaaacactgagccctttaatgcttgaagcccttggtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tccccagagctgggcatgagattgaaacactgagccctttaatgcttgaagcccttggtg 740

                                                                       
Query: 541 tctgtggtggccaccctcctgaagccagacctcccccttcc-taacccctgtaattgcag 599
           |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 741 tctgtggtggccaccctcctgaagccagacctcccc-ttccctaacccctgtaattgcag 799

                               
Query: 600 tctcctgtgactaatgtgca 619
           ||||||||||||||||||||
Sbjct: 800 tctcctgtgactaatgtgca 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)