BAC Information

Click to search

BAC

Clone NameMSMg01-114N10
Chromosome17 (Build37)
Map Location 24,776,849 - 24,936,957
singlet/doubletdoublet
Overlap geneSlc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6
Upstream geneMmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1
Downstream gene4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114N10.T7 (MSMg01no114_n10.b1)MSMg01-114N10.TJ (MSMg01no114_n10.g1)
ACCAG326622AG326623
length767731
length of high quality
(start - end)		159 (81 - 239)425 (76 - 500)
definitionCHROMAT_FILE: MSMg01no114_n10.b1 PHD_FILE: MSMg01no114_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:38 2005CHROMAT_FILE: MSMg01no114_n10.g1 PHD_FILE: MSMg01no114_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,936,799 - 24,936,957)(24,776,849 - 24,777,273)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATTTAATTTTTCACAATGGGTGTCTGTGGGTGTGCCTGTATGTGATCTG
TGTATATGCAGACATCATGTCATGTGTGTGGACATCATGGGACAGATCCC
CAAAGGGCAGGCAGCAAGTCTCAGCAGCAAGCAAGCAGGTTGGTTTGTTG
TTTGTTTGCTTGTTTGTTGTTGGTTTTGGTTGAGTTTGGCGGCCAATATT
TTATTAACGCTTTCCTATTACTTTTATCTCCCTTCTCTTTCCCAATCTTC
AATTCTCCCACTCGATTTTCTTTTTCTATCCGCCCTTATTACTCCCCTTT
TCCTTCTCTATTTTTTTATTATCTCCCCCCTCTTCCCACTCTTTTTGCCC
CTCCTATAACCCACATCCCCCCCTTTTTCCCCCTATATTTTTTTCCCCCT
TTGCCCCCCCACCTGCTGTACACATTCGAATCATGTACCCCACACCTCTT
ACCTCTCGGTAACTATATTATTTTCGCATTCTTTATATTTATACAACACC
ATCCCATAATTCTTCTAATATTTTTCCCACCCGATTCACCATACCTTATT
CCCCCCCTCTCCATTTTACCCGTTTTTCTTCTTTTTCCCGCCTTATTCTT
TCCCACTTTCCCTATAATAGCGCCTTTTATAGCCCCTTTTATTTTTTTTC
TTTACTATTTGCCCCACCTTATTTTATCTATTTTTCTTCCATCCGTATTT
CGTGTCGCTCTACCTAN

CATTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTTCAGTCAGCAGGCCCGAGGCAG
GATGGCAGAGGCCCTTGGCAGACCACCACGCACAGCTCCTCCCTCTCTCA
CTGTTTCTGTCTCCGTGTCTGTCTTGGCTGGCTGTCTATCTCTGTCTCTC
TCTTCTCTGGGTTTCTCTCCTCTCTGATCTTGCTATGACCACCGCAGCAC
CCAGTGGACAAGACAAGGGTTCATGGGGTCATGGGTTGGTTTCTGGGTGG
TGTGTGACCACCCTCCAGTCTGCTGAGGCTTGGGGAGCTCTGGAGAGGCC
CAAGGTCTGAGCAGGAAGAGACCCTGGAACCCCTGGACAGGCAAAGAGGG
ACTCAGAAGTTGCTGAACATCTCTCGCTTCCGGTTCCAGTCCATCTGTGG
TGCCCGCTTGTTGACCCGAGTAGCTCGAGTCTTCTCCTTGGCCTCGGCTG
CTGTGGGACTCACGTGGAGGCCACTTTCCTGGAAGGCGTCTCGCTTCCAG
GTACTGCCATCCTGTGGGCAGGCAAGGTACAAACAGTGATCCCTACTGGC
GTTAGCCACCTTTCCCAGGACCTTAAGCCAGGGGTCACCCTCTGGTCTTG
GCGAAACAGCCCCCAAGGCTTTCTTGGACGAGGTACCCCTACAATCCCGG
TTATTTTCCCCCCCCAATTCCCACCCCTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_n10.b1 MSMg01no114_n10.b1 CHROMAT_FILE:
MSMg01no114_n10.b1 PHD_FILE: MSMg01no114_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:38 2005
         (159 letters)



>mm_chr17_24936650_24937208
          Length = 559

 Score =  308 bits (159), Expect = 1e-88
 Identities = 159/159 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgtgcctgtatgtgatctgtgtatatgcagacatcatgtcatgtgtgtggacatcatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gtgtgcctgtatgtgatctgtgtatatgcagacatcatgtcatgtgtgtggacatcatgg 249

                                                                       
Query: 61  gacagatccccaaagggcaggcagcaagtctcagcagcaagcaagcaggttggtttgttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gacagatccccaaagggcaggcagcaagtctcagcagcaagcaagcaggttggtttgttg 189

                                                  
Query: 121 tttgtttgcttgtttgttgttggttttggttgagtttgg 159
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tttgtttgcttgtttgttgttggttttggttgagtttgg 150


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 559
Length adjustment: 8
Effective length of query: 151
Effective length of database: 551
Effective search space:    83201
Effective search space used:    83201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no114_n10.g1 MSMg01no114_n10.g1 CHROMAT_FILE:
MSMg01no114_n10.g1 PHD_FILE: MSMg01no114_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:38 2005
         (425 letters)



>mm_chr17_24776649_24777473
          Length = 825

 Score =  791 bits (409), Expect = 0.0
 Identities = 421/425 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttcagtcagcaggcccgaggcaggatggcagaggcccttggcagaccaccacgcacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttcagtcagcaggcccgaggcaggatggcagaggcccttggcagaccaccacgcacag 260

                                                                       
Query: 61  ctcctccctctctcactgtttctgtctccgtgtctgtcttggctggctgtctatctctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcctccctctctcactgtttctgtctccgtgtctgtcttggctggctgtctatctctgt 320

                                                                       
Query: 121 ctctctcttctctgggtttctctcctctctgatcttgctatgaccaccgcagcacccagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctctcttctctgggtttctctcctctctgatcttgctatgaccaccgcagcacccagt 380

                                                                       
Query: 181 ggacaagacaagggttcatggggtcatgggttggtttctgggtggtgtgtgaccaccctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggacaagacaagggttcatggggtcatgggttggtttctgggtggtgtgtgaccaccctc 440

                                                                       
Query: 241 cagtctgctgaggcttggggagctctggagaggcccaaggtctgagcaggaagagaccct 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 cagtctgctgaggcttggggagctctggagaggcccaaggtccgagcaggaagagaccct 500

                                                                       
Query: 301 ggaacccctggacaggcaaagagggactcagaagttgctgaacatctctcgcttccggtt 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 ggaacccctggacaggcaaagagggactcagaagttgctgaagatctctcgcttccggtt 560

                                                                       
Query: 361 ccagtccatctgtggtgcccgcttgttgacccgagtagctcgagtcttctccttggcctc 420
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 ccagtccatctgtggtgcccgcttgttgacccgagtagctcgagccttctccttggcctc 620

                
Query: 421 ggctg 425
            ||||
Sbjct: 621 agctg 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |