BAC Information

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BAC

Clone NameMSMg01-114N13
Chromosome17 (Build37)
Map Location 33,979,193 - 33,979,760
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7
Downstream geneCd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114N13.T7 (MSMg01no114_n13.b1)MSMg01-114N13.TJ (MSMg01no114_n13.g1)
ACCAG326628AG326629
length756736
length of high quality
(start - end)		328 (41 - 368)622 (77 - 698)
definitionCHROMAT_FILE: MSMg01no114_n13.b1 PHD_FILE: MSMg01no114_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:38 2005CHROMAT_FILE: MSMg01no114_n13.g1 PHD_FILE: MSMg01no114_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCGAGAGGATCCGCGG
AATTCCCTATATTCACCAGGCTAGCCTTGAACTCAAAGAGCTCCTACTGC
CTCTGCCTCTTGGCTGGGACTAAAGGTATATGCCACCACACATGGCTTAT
TTTACCTTGAGACATGATCTCATTATGAAGCCATGGGAAGTCTGGAATTT
GCTATGTATTTCAGGCTGCCCTCGAACTCACAAAGATCTGCCTGCCTACC
TCTAAATCTGTGTGCTGGATTAAAGATATGCACCACCACAAAAGGCCCTT
TGTGATTTATTTTATGTGTACAGGTGTTTTGCCTACCTGTGTGTCTTGGT
ACCATGTGTATCCTTGGCATCAGCTGCATCCCCTGATACTAGAGATACAG
ATGGTTGTGAGCCCCTACATGGATCCTGAGAATCCAACCCAGGTCCTCTT
CAATAACAGAGCAGTCCAGCGCTCTTAACCACTGAGCCATCTCTTCAGCA
CACACCCCCCCCCCCCACTTGTTTTACTCCTAAAGTCCTTTGTCGCTGAG
CATATCACCCCCATGGGCACACTATTTCCCCTCTATTACGCGCAGCTCCA
CATTCCATCCCCCCCCCCCTTTTTTAAAACCTATCATGCATCTCTTCAAT
CACCCTTACGTTTTCTTACTCTCCCCTTGGGCATAGCGCCCCCCATCTCC
GCACCCTCATCATCACTTTATGTCTCTTGCCCCGCCCCTGGTTTCATCCC
CCACCC

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXGGGAGTAGTTCAGTAGTAGAGCAC
TTGCCTAGTAGTATTCAGGAGGCTCTAGGTTTAATCCCCAGTACCATGAA
AATAACCACATTAACTTGAAATAATAAACTTCTGCTGAACAGTGGTGGTG
TACGCCTTTAATCCCAGCTCTTGGGAGGCAAAGACAGGCAGATTTCTGAG
TTCCAGGCCAGCCTGGTCTACCGAGTAAGTTCCAGGACACCGGGGGCTAC
AAAGAGAAACCCTGTCTCAAAAAACCAAAAATAAAAATAAACCTTCTAGG
GATATAAATGAACTTAGCAATTTTGACCTAAACTTCACATGTAGCCTACT
GCAAATATCACTGCCCAATGGTCCCAATGAATATGGCAGCCACACCCTGT
GAACACTCCCCAGCAGGTCCCTCCTTTGTGCCACCTAAGGATTTTACTTA
TTTTAGCTTTATTGTCTTGATTGCCCCCTAGAATGCCAGCTGCAGGCGAA
CTAGGATGTTGGTTTCCTTTGATGAATGGCGAAAATAGTGAGGGAATGAT
GGAATGATCAAATGAGTGAACAGTTACTGGCTTCGAACCTGGACTGACCA
TCTCCTTGGTTCCCATCCCAACCTCATTAACTTCTAGTTCTCACACACTT
GAGAAACATTTATTCTAACATGGGCCTGCTAGATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_n13.g1 MSMg01no114_n13.g1 CHROMAT_FILE:
MSMg01no114_n13.g1 PHD_FILE: MSMg01no114_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:38 2005
         (622 letters)



>mm_chr17_33978739_33979760
          Length = 1022

 Score = 1067 bits (552), Expect = 0.0
 Identities = 564/568 (99%)
 Strand = Plus / Minus

                                                                        
Query: 55   ttaatccccagtaccatgaaaataaccacattaacttgaaataataaacttctgctgaac 114
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 ttaatccccagttccatgaaaataaccacattaacttgaaataataaacttctgctgaac 963

                                                                        
Query: 115  agtggtggtgtacgcctttaatcccagctcttgggaggcaaagacaggcagatttctgag 174
            |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 962  agtggtggtgtacgccttaaatcccagcacttgggaggcaaagacaggcagatttctgag 903

                                                                        
Query: 175  ttccaggccagcctggtctaccgagtaagttccaggacaccgggggctacaaagagaaac 234
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902  ttccaggccagcctggtctaccgagtaagttccaggacaccgggggctacaaagagaaac 843

                                                                        
Query: 235  cctgtctcaaaaaaccaaaaataaaaataaaccttctagggatataaatgaacttagcaa 294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842  cctgtctcaaaaaaccaaaaataaaaataaaccttctagggatataaatgaacttagcaa 783

                                                                        
Query: 295  ttttgacctaaacttcacatgtagcctactgcaaatatcactgcccaatggtcccaatga 354
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782  ttttgacctaaacttcacatgtagcctactgcaaatatcactgcccaatggtcccaatga 723

                                                                        
Query: 355  atatggcagccacaccctgtgaacactccccagcaggtccctcctttgtgccacctaagg 414
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722  atatggcagccacaccctgtgaacactccccagcaggtccctcctttgtgccacctaagg 663

                                                                        
Query: 415  attttacttattttagctttattgtcttgattgccccctagaatgccagctgcaggcgaa 474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662  attttacttattttagctttattgtcttgattgccccctagaatgccagctgcaggcgaa 603

                                                                        
Query: 475  ctaggatgttggtttcctttgatgaatggcgaaaatagtgagggaatgatggaatgatca 534
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602  ccaggatgttggtttcctttgatgaatggcgaaaatagtgagggaatgatggaatgatca 543

                                                                        
Query: 535  aatgagtgaacagttactggcttcgaacctggactgaccatctccttggttcccatccca 594
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542  aatgagtgaacagttactggcttcgaacctggactgaccatctccttggttcccatccca 483

                                        
Query: 595  acctcattaacttctagttctcacacac 622
            ||||||||||||||||||||||||||||
Sbjct: 482  acctcattaacttctagttctcacacac 455


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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