MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-114O10
Chromosome	17 (Build37)
Map Location	24,936,795 - 24,936,970
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6
Downstream gene	4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn
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BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-114O10.T7 (MSMg01no114_o10.b1)	MSMg01-114O10.TJ (MSMg01no114_o10.g1)
ACC	AG326668	AG326669
length	805	733
length of high quality (start - end)	176 (68 - 243)	565 (76 - 640)
definition	CHROMAT_FILE: MSMg01no114_o10.b1 PHD_FILE: MSMg01no114_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:42 2005	CHROMAT_FILE: MSMg01no114_o10.g1 PHD_FILE: MSMg01no114_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:42 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	TXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGAAGAGGATCCGCGGAAT TCATTTATTTTTTTACATGGGTGTCTGTGGGTGTGCCTGTATGTGATCTG TGTATATGCAGACATCATGTCATGTGTGTGGACATCATGGGACAGATCCC CAAAGGGCAGGCAGCAAGTCTCAGCAGCAAGCAAGCAGGTTGGTTTGTTG TTTGTTTGCTTGTTTGTTGTTGGTTTTGGTTGAGTTTGGGGGTTTCTCCT CCCTCACTCCTCCCCCTACCCTCAAACCCCCACCCCACACCTCTCCTCCC CCCCCCCTATCCCCTTTTTTCCCCCTCCCCATCCCTCTCTTCCCCCCCTC CCCAACCCTTTTTCCCCCCCGCCCCCGCGACCCCTCCACACCCTATTCAT CTTCCCCCTCCCCTCCCCCCCTCTTCCAAACCACCTCCCCCCTTCTTTTC TATTCCTCCCCATCCTCTTATTTTGACCTCCCCCTCCTACTTCTCTCCCC TCCCTATCCTTCCTATAACGCTCACTCTTTATTCTCCCCCTTCCCCCGCC CCTCCCCTCCTTCTCCCCCTCTCCCCCCTCCTAAATCCCCTCCCCCCCAC TTTTTTCCTTACCCCCTTCCGCCCCCATACTTTAGTGCCTCCTCCCCCTT TACCTATCCCCTTCATTCCCTTCCCCTCCTCCCCTCCCTTCACCCCCCCC CCCACCCCCCCCCCCCCTCCCCACTCTCCCTCCCTTCCTTTATCCTACAA TCAACCCCCATCCTTTCCCCACCACCACCCCACCCGCACCATCCCTCCCT CCCCT	CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXCTAAACCTGATAAACAGCTTCGGTG AAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTAC ACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACCCCTTCTCA ATAGTCACAAATAATATAAAATATCTCGGCGTGACTCTAAGGAAGTGAAA GATCTGTATGATAAAAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGA TCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACA TTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATC CCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAGGAGCAATTTG CAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCA AGGATAAAATAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTAC TACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACA AGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCT ATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAA GACAGCATTTTCAACAATTGGTGCTGGCACAAC
quality values	Open. Hide. 6 6 7 9 26 39 39 37 36 36 39 36 27 19 15 9 9 9 17 17 36 26 26 22 17 17 9 9 7 8 7 8 9 9 13 24 28 28 29 28 21 22 24 32 39 47 36 42 38 29 39 28 28 19 23 19 15 15 12 15 15 20 28 23 29 22 20 13 19 25 37 43 42 42 43 46 43 44 44 46 43 43 46 59 59 59 57 57 48 57 48 57 48 57 57 57 57 57 57 54 57 57 68 59 57 34 32 18 13 11 25 25 32 32 37 50 57 57 50 50 50 50 50 50 50 54 54 57 57 57 57 57 57 57 57 57 57 57 52 52 52 52 57 52 57 57 52 52 52 57 52 52 57 50 57 52 52 52 48 57 48 50 50 54 54 54 57 59 47 47 43 43 32 37 42 43 44 43 47 57 48 54 54 59 57 57 57 57 57 57 57 54 54 54 54 59 54 54 54 54 57 54 57 54 48 48 47 47 48 39 43 39 42 43 48 46 46 43 46 46 48 48 48 48 48 57 48 43 43 36 39 43 43 43 46 39 37 32 24 28 20 16 16 11 8 8 8 8 10 8 8 8 8 6 6 6 6 8 8 12 10 10 10 13 13 10 10 10 10 12 10 10 10 8 8 10 8 8 11 11 8 8 8 8 8 8 8 6 6 8 8 10 8 10 13 12 13 13 19 24 21 18 13 11 10 9 9 10 10 9 11 11 8 8 7 8 8 8 8 8 8 10 17 10 6 6 8 8 13 9 9 9 9 9 8 8 8 8 8 8 9 9 10 10 10 9 9 9 9 10 12 8 6 6 6 6 8 8 9 10 8 8 8 8 8 8 11 15 11 12 12 11 15 15 16 10 8 8 6 6 8 8 11 8 6 8 7 7 6 8 8 8 8 8 6 6 8 8 10 10 13 19 13 19 13 15 15 19 18 18 13 15 9 9 9 14 10 17 12 9 8 8 8 8 8 9 11 11 10 9 10 8 8 8 8 8 8 8 8 10 8 8 8 8 7 7 10 8 8 8 8 8 8 9 9 9 9 12 17 12 10 10 8 8 8 6 6 8 8 8 10 13 13 8 8 8 8 6 6 8 10 13 13 10 13 8 8 8 8 8 8 8 8 10 8 8 8 10 10 12 9 9 10 10 9 8 8 8 8 8 6 6 8 8 6 6 8 6 6 6 6 8 8 6 6 8 8 8 10 8 8 8 8 10 10 10 11 15 13 8 8 8 8 13 11 17 11 9 9 10 8 8 8 8 8 7 6 6 6 8 8 8 8 8 8 6 7 13 10 10 9 10 10 10 10 10 12 10 10 8 8 10 8 8 8 8 8 10 11 11 11 12 16 11 11 11 12 11 11 11 10 10 13 14 16 15 13 10 8 8 6 6 8 8 10 8 13 12 8 8 8 8 11 15 10 8 8 8 8 8 10 8 8 8 6 6 6 8 11 12 9 10 10 10 13 10 11 10 9 10 10 8 8 8 8 8 8 8 9 11 11 10 8 8 8 10 8 8 8 8 10 10 10 12 10 15 10 10 13 16 19 14 12 10 10 11 13 8 8 8 8 8 8 9 9 14 11 13 13 12 10 9 9 9 7 10 8 11 10 10 12 14 14 16 15 13 10 10 10 9 8 8 8 8 8 9 10 9 9 9 12 12 16 12 12 12 10 10 8 8 8 8 8 6 8 8 8 8 8 10 10 8 6 7 12 10 8 9 8 9 9 9 10 11 11 11 11 11 8 8 6 6 8 8 8 10 8 8 8 10 8 10 8 10 6 6 6 6 6 6 10 10 10 12 11 14 13 13 7 7 8 12 12 8 8	Open. Hide. 9 17 19 17 8 8 8 17 19 25 25 11 11 13 28 28 48 48 57 48 57 57 57 43 43 43 43 43 43 43 40 23 21 13 12 11 13 21 23 36 41 42 42 44 54 68 68 68 42 50 47 47 47 50 48 48 48 68 57 57 36 41 41 30 36 26 28 28 37 32 47 48 48 50 48 48 47 44 59 59 54 57 57 57 57 57 68 57 57 57 57 50 57 57 57 43 43 35 44 44 68 68 68 68 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 57 57 50 50 37 37 37 50 43 52 57 57 57 52 57 57 57 57 57 52 45 57 57 57 57 57 57 57 57 52 52 52 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 57 57 57 62 62 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 62 62 62 52 52 43 62 44 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 62 62 68 62 62 62 62 62 62 62 62 62 62 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 43 39 39 62 62 62 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 62 68 68 62 62 62 62 62 62 62 62 62 62 62 62 52 52 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 52 52 62 62 68 62 62 62 62 62 62 62 62 62 62 57 57 57 59 59 57 57 52 52 52 57 57 52 52 52 57 59 59 57 57 52 52 52 57 59 68 68 57 68 57 57 57 59 59 68 57 57 57 57 57 57 59 57 57 57 57 57 57 57 52 52 52 52 57 59 59 57 68 68 68 57 57 52 52 52 57 59 59 57 54 52 52 57 57 68 68 68 57 57 57 57 57 59 59 57 57 48 50 50 50 47 44 47 41 41 57 57 57 68 68 57 57 57 57 57 57 59 48 48 48 42 42 42 42 48 57 57 44 44 30 32 32 39 39 43 48 48 54 57 57 57 54 54 57 57 57 57 57 57 57 57 57 59 59 43 43 35 35 35 43 43 57 57 57 57 57 48 43 43 43 43 48 48 59 59 59 47 41 39 39 39 39 37 37 41 43 59 59 59 59 41 50 50 50 50 57 41 41 30 30 28 34 22 24 24 34 34 41 39 27 25 19 28 28 30 32 41 44 41 41 41 37 37 37 37 37 37 43 47 43 41 26 25 28 23 23 34 34 41 41 28 18 17 16 16 10 14 13 18 13 13 13 21 28 41 30 30 23 23 11 18 18 34 34 48 43 43 41 34 34 25 22 22 24 20 22 24 31 34 35 39 39 39 37 37 41 34 31 20 23 20 28 13 15 11 12 12 28 28 11 9 9 9 9 15 15 14 14 14 21 26 39 40 40 37 29 29 26 26 32 36 37 30 32 22 16 12 17 17 17 24 15 16 15 16 16 16

Alignment Information

BAC End 1	BAC End 2
Query= MSMg01no114_o10.b1 MSMg01no114_o10.b1 CHROMAT_FILE: MSMg01no114_o10.b1 PHD_FILE: MSMg01no114_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:42 2005 (176 letters) >mm_chr17_24936650_24937225 Length = 576 Score = 340 bits (176), Expect = 2e-98 Identities = 176/176 (100%) Strand = Plus / Minus Query: 1 tgggtgtctgtgggtgtgcctgtatgtgatctgtgtatatgcagacatcatgtcatgtgt 60 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 321 tgggtgtctgtgggtgtgcctgtatgtgatctgtgtatatgcagacatcatgtcatgtgt 262 Query: 61 gtggacatcatgggacagatccccaaagggcaggcagcaagtctcagcagcaagcaagca 120 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 261 gtggacatcatgggacagatccccaaagggcaggcagcaagtctcagcagcaagcaagca 202 Query: 121 ggttggtttgttgtttgtttgcttgtttgttgttggttttggttgagtttgggggt 176 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 201 ggttggtttgttgtttgtttgcttgtttgttgttggttttggttgagtttgggggt 146 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.34 0.600 1.10 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 2, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 10 Number of extensions: 1 Number of successful extensions: 1 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 176 Length of database: 576 Length adjustment: 8 Effective length of query: 168 Effective length of database: 568 Effective search space: 95424 Effective search space used: 95424 X1: 7 (13.9 bits) X2: 517 (999.5 bits) X3: 517 (999.5 bits) S1: 7 (14.4 bits) S2: 7 (14.3 bits)

BAC End 1

BAC End 2

Query= MSMg01no114_o10.b1 MSMg01no114_o10.b1 CHROMAT_FILE:
MSMg01no114_o10.b1 PHD_FILE: MSMg01no114_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:42 2005
         (176 letters)



>mm_chr17_24936650_24937225
          Length = 576

 Score =  340 bits (176), Expect = 2e-98
 Identities = 176/176 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggtgtctgtgggtgtgcctgtatgtgatctgtgtatatgcagacatcatgtcatgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggtgtctgtgggtgtgcctgtatgtgatctgtgtatatgcagacatcatgtcatgtgt 262

                                                                       
Query: 61  gtggacatcatgggacagatccccaaagggcaggcagcaagtctcagcagcaagcaagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggacatcatgggacagatccccaaagggcaggcagcaagtctcagcagcaagcaagca 202

                                                                   
Query: 121 ggttggtttgttgtttgtttgcttgtttgttgttggttttggttgagtttgggggt 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggttggtttgttgtttgtttgcttgtttgttgttggttttggttgagtttgggggt 146


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 576
Length adjustment: 8
Effective length of query: 168
Effective length of database: 568
Effective search space:    95424
Effective search space used:    95424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

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BAC End Information

Alignment Information