BAC Information

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BAC

Clone NameMSMg01-114O17
Chromosome17 (Build37)
Map Location 3,850,118 - 3,977,041
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383196, LOC100040029, LOC432993, D030013I16Rik, LOC100040128, 1700024P12Rik, LOC435499, LOC224487, Rbm16, LOC665812, LOC621579, LOC624144, Tiam2, LOC630810, Tfb1m, Cldn20, 1700102H20Rik, Nox3
Downstream gene4930470H14Rik, Ppia-ps17_26.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114O17.T7 (MSMg01no114_o17.b1)MSMg01-114O17.TJ (MSMg01no114_o17.g1)
ACCAG326682AG326683
length747748
length of high quality
(start - end)		541 (46 - 586)576 (76 - 651)
definitionCHROMAT_FILE: MSMg01no114_o17.b1 PHD_FILE: MSMg01no114_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:44 2005CHROMAT_FILE: MSMg01no114_o17.g1 PHD_FILE: MSMg01no114_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,850,118 - 3,850,655)(3,976,545 - 3,977,041)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTTAGTATTGAATTCGTGTAGCCAGGCTGGCCTCGAACCCAGAA
ATCCACCTGCCTCTGCTTTCCAAGTGCTGGGATTAAAGTAGTTTAGCCAT
CCAGCTCTCTATGTGGATACTCTGTCTCTGTCTCCTGAGGCTGGGATTGC
AAGCAGGCTGCCACACCCTCCCAGCAGCATCCTATGGGTGCTAGGGAGCT
GACTTCTGGTTCTCCTACTTTACCCACTGAACCATCCCCAAAGTCATTCC
CCCTTCCAAGGAAGCTAGAATTTCTGCCATTGCTATTTCTGTTTCATTGC
AGATTTTGGATACATTTAATTGTCTGATAAGAATTTGAAATAGTTCATTT
GTTAGCTGAATTATTGCCCAGAAAAATGTGAAGAGGGAAGAAATGCTTTC
AGTTCGATAAAGTTAACATCTGTACAGTCAATGGAGGAGCTGGGGGTTTT
CTCATTGACTTCTCCCTCTGTAGGGAAATGATGCTAAGCCATCCAGTTTA
GCTACACTTACAATTCTAATTGGAGGATGAGTTGTGTCCAGAGCGTTCCT
TTTGGAAATATAAACTCAATGGACCTTCCCAGTGAATGCTGAGCCAGGAC
AGTCTCCCACCTCCCAGGATTTGTTTCGGTTATTTTGCCAGGGTCTATGA
ATTTATTTTTGTTTTCTTGGTTAGCCTGCATTACTTCTTTTCGGCAG

CATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTAATAAGGAGAAAGATGAGAAGAA
ATACAACTGATACTGATGGGGAATGTTCTGACCGAAGATTGTTAGACTGT
AGACTTTTTGTCTTTAGCTCAGTCTGAATTCTCTGAGAAAATTGAGGTTT
TTAAGACTCAATCGGATGGAAATATCCAGGACAAGACTTAGGCACTTACT
GGCAAAGTAACTAGGATTTCACAATACTTGGGCAAGTTAATTCAAGCTGG
TGCTATGGGCAAACAGAACATGGTAACCATGGCTGGTGGCTCAAAGCTGA
GTGAGTAGTGTACACTATGATAGTTGATCTTAGCCTACTGAAATAATTGG
GTGAGTGAATCAATGTGCCCATAGACAGTGATCCCTGAGTCTGTACCTAA
TAGTCATGTTTTATAGTCTCAGCAGAGAACTCTGGCTTACAGCATAATTA
ATAATGAATAACACAGGTAGAAGTGTTATTGAGTTAGAGTTGAGATATGT
TAATAGACACTGAGGTGAATCTGTAATCAACTAAAGTAACCCACATTAAT
ATATTTTACGTTTGCAAAGCTTAGAAAGACAAATAGCTTCAATATCTTCC
GCAGCAGAAAACGACAAGTAGATTAATGTTTACCTAGCAATCAGCGGCCC
TAATTTTCTATTGGTCTCACTAACAGGGTATCTTCCATGAGGTCTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_o17.b1 MSMg01no114_o17.b1 CHROMAT_FILE:
MSMg01no114_o17.b1 PHD_FILE: MSMg01no114_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:44 2005
         (541 letters)



>mm_chr17_3849915_3850855
          Length = 941

 Score = 1009 bits (522), Expect = 0.0
 Identities = 534/538 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacttagtattgaattcgtgtagccaggctggcctcgaacccagaaatccacct 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacttagtagtgaattcgtgtagccaggctggcctcgaacccagaaatccacct 263

                                                                       
Query: 64  gcctctgctttccaagtgctgggattaaagtagtttagccatccagctctctatgtggat 123
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 264 gcctctgctttccaagtgctgggattaaagtagtttagctatccagctctctatgtggat 323

                                                                       
Query: 124 actctgtctctgtctcctgaggctgggattgcaagcaggctgccacaccctcccagcagc 183
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 324 actctgtctctgtctcctgaggctggaattgcaagcaggctgccacaccctcccagcagc 383

                                                                       
Query: 184 atcctatgggtgctagggagctgacttctggttctcctactttacccactgaaccatccc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atcctatgggtgctagggagctgacttctggttctcctactttacccactgaaccatccc 443

                                                                       
Query: 244 caaagtcattcccccttccaaggaagctagaatttctgccattgctatttctgtttcatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caaagtcattcccccttccaaggaagctagaatttctgccattgctatttctgtttcatt 503

                                                                       
Query: 304 gcagattttggatacatttaattgtctgataagaatttgaaatagttcatttgttagctg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gcagattttggatacatttaattgtctgataagaatttgaaatagttcatttgttagctg 563

                                                                       
Query: 364 aattattgcccagaaaaatgtgaagagggaagaaatgctttcagttcgataaagttaaca 423
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 564 aattattgcccagaaaaatgtgaagagggaagaaatgctttcagttcaataaagttaaca 623

                                                                       
Query: 424 tctgtacagtcaatggaggagctgggggttttctcattgacttctccctctgtagggaaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tctgtacagtcaatggaggagctgggggttttctcattgacttctccctctgtagggaaa 683

                                                                     
Query: 484 tgatgctaagccatccagtttagctacacttacaattctaattggaggatgagttgtg 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgatgctaagccatccagtttagctacacttacaattctaattggaggatgagttgtg 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no114_o17.g1 MSMg01no114_o17.g1 CHROMAT_FILE:
MSMg01no114_o17.g1 PHD_FILE: MSMg01no114_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:44 2005
         (576 letters)



>mm_chr17_3976545_3977521
          Length = 977

 Score =  845 bits (437), Expect = 0.0
 Identities = 478/501 (95%), Gaps = 17/501 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaataaggagaaagatgagaagaaatacaactgatactgatggggaatgttctgaccga 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttaataaagagaaagatgagaagaaatacaactgatactgatggggaatgttctgaccga 438

                                                                       
Query: 61  agattgttagactgtagactttttgtctttagctcagtctgaattctctgagaaaattga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agattgttagactgtagactttttgtctttagctcagtctgaattctctgagaaaattga 378

                                                                       
Query: 121 ggtttttaagactcaatcggatggaaatatccaggacaagacttagg-----cacttact 175
           |||||||||||||||||||||||||||||||||||||||||||||||     ||||||||
Sbjct: 377 ggtttttaagactcaatcggatggaaatatccaggacaagacttaggcttcccacttact 318

                                                                       
Query: 176 ggcaaagtaactaggatttcacaatacttgggcaagttaattcaagctggtgctatgggc 235
           |||||||||||||||||||||||||||||||||||||||||||||||     ||| ||||
Sbjct: 317 ggcaaagtaactaggatttcacaatacttgggcaagttaattcaagc----actacgggc 262

                                                                       
Query: 236 aaacagaacatggtaaccatggctggtggctcaaagctgagtgagtagtgtacactatg- 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 aaacagaacatggtaaccatggctggtggctcaaagctgagtgagtagtgtacactatga 202

                                                                       
Query: 295 -------atagttgatcttagcctactgaaataattgggtgagtgaatcaatgtgcccat 347
                  |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 201 tcgagtaatagttgatcttagcctactaaaataattgggtgactgaatcaatgtgcccat 142

                                                                       
Query: 348 agacagtgatccctgagtctgtacctaatagtcatgttttatagtctcagcagagaactc 407
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 141 agacagtgatccctgagtctgtacctaatagtcatgttttatagtctcagcagagagctc 82

                                                                       
Query: 408 tggcttacagcataattaataatgaataacacaggtagaagtgttattgagttagagttg 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  tggcttacagcataattaataatgaataacacaggtagaagtgttattgagttagagttg 22

                                
Query: 468 agatatgttaatagacactga 488
           |||||||||||||||||||||
Sbjct: 21  agatatgttaatagacactga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 977
Length adjustment: 10
Effective length of query: 566
Effective length of database: 967
Effective search space:   547322
Effective search space used:   547322
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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