BAC Information

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BAC

Clone NameMSMg01-115K08
Chromosome17 (Build37)
Map Location 73,592,107 - 73,592,362
singlet/doubletsinglet
Overlap geneLycat
Upstream geneAlk, Ypel5, Lbh, LOC668709
Downstream geneCapn13, LOC100043666, Galnt14, Ehd3, LOC240160, Xdh, Srd5a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115K08.T7 (MSMg01no115_k08.b1)MSMg01-115K08.TJ (MSMg01no115_k08.g1)
ACCAG327224AG327225
length741707
length of high quality
(start - end)
260 (43 - 302)237 (84 - 320)
definitionCHROMAT_FILE: MSMg01no115_k08.b1 PHD_FILE: MSMg01no115_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:38 2005CHROMAT_FILE: MSMg01no115_k08.g1 PHD_FILE: MSMg01no115_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGCAGACTGGTTCCATTTCACCGGCTCTCAAGCCCAACAAAGAAGCTC
TGGAACAGTCACAATAAGGACTAGCAGAGGGATCCTGTTGGTGTTAAACT
GTTTACATTTCTTTATATACAATAATGTGCTTTCAGTGCCTTAGTTGTGG
GTCCCTTTCTTTTTCCTGTTCTAAGAATTGTATACCGTGTTCTTAGATAA
AGTCTCTCCTCGTCACTCACTAGGAGGAAAGTGGTGCCTCAATACCAGTG
GGTCAGCGGCTGACTGAAACAAAACAAAACGCTATGTTGTAACATGGAGA
ACGGAGCTCGGTGCTGACCTATGGTTGCCTAGTTCTTACACAGTGGCAAA
CAATTGCTTGGCCACCACCTGGACTTCATTCTACGTGTGTTCCTACCAGG
TGTCCTGTACCTACTTAAAATTTTTTATTCCAGAGCTCTGCTTTTGCCAA
CTTCTTTTCACAACATCATTACCTGGACATTTCCCCATTTTTACCAACTC
CTTACAGAATGCCCTTATCTTCCGCGTCCCCTTGTTACATTTGCTCACTC
ACCTGTATAACGTCCTCCCATCATAATTGCACTGCATCACATGTTCTTTT
CATCCTGTTGCTCCCTCTGGCTTTACCGTAACCTACCCCCCTTTCGGCCA
CCAAGTCCGTTGCTTTCCCCCTCACGGTCATGCCTCCTACC
CTATATTTCATCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCAGTTGGTGTTCTCA
TTGTTGCGTCGATTTCCAGTTTCAGGTCTTGCACGGTTTTATTTCCTTCC
TTCATCTGTTTAATTATATTCTCCTGTATTGTTTAAGGAATTTACTTGTT
TCCTCTTTAAAAACCTCTATCTGATTGTATTTTTCCTATATTTATTTAAG
GGATTTATTCATTTCCTCTTTAATGGCCTCTATCATCTGTATAAGATTGT
ATTGAAGGTCATTTTCTTGTGTTTCTGTTTGTATTAGGATATCCAGGGCT
TGCTGTAATGCCGTAGCTGTGTTTTGGCCGTATCATGTTGCACTAGCACT
TGTTGACTGTGTTCCTTTGAGCCCCCCTCATTATATCTATGTTTTTGTCC
CTTGCATGTTCTTGTTGTAATTCATATTATCACATTATTCAACCCCTCTT
CTCCTGCTTTCATAATTCTCTTACCTTATACCCTAGTATTTTTTTTTCTT
CCCTTTTGTATACCATTTTTCTTTCCCTATTCTTCCCCCCCTTTTTTTCT
CTTATCTCTNATTTCTCTCTTTATTTCCTTTAACTTTCCCCTTCTTTTTT
TTTATTTCTCCCTTCTTCCTTTTAATCCCCAAAAGCTTTTTCTTATTACT
TTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_k08.b1 MSMg01no115_k08.b1 CHROMAT_FILE:
MSMg01no115_k08.b1 PHD_FILE: MSMg01no115_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:38 2005
         (260 letters)



>mm_chr17_73591903_73592562
          Length = 660

 Score =  480 bits (248), Expect = e-140
 Identities = 254/256 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgcagactggttccatttcaccggctctcaagcccaacaaagaagctctggaac 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgcagattggttccatttcaccggctctcaagcccaacaaagaagctctggaac 264

                                                                       
Query: 65  agtcacaataaggactagcagagggatcctgttggtgttaaactgtttacatttctttat 124
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 265 agtcacaataaggactagcagagggatcctgtcggtgttaaactgtttacatttctttat 324

                                                                       
Query: 125 atacaataatgtgctttcagtgccttagttgtgggtccctttctttttcctgttctaaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atacaataatgtgctttcagtgccttagttgtgggtccctttctttttcctgttctaaga 384

                                                                       
Query: 185 attgtataccgtgttcttagataaagtctctcctcgtcactcactaggaggaaagtggtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attgtataccgtgttcttagataaagtctctcctcgtcactcactaggaggaaagtggtg 444

                           
Query: 245 cctcaataccagtggg 260
           ||||||||||||||||
Sbjct: 445 cctcaataccagtggg 460


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 660
Length adjustment: 9
Effective length of query: 251
Effective length of database: 651
Effective search space:   163401
Effective search space used:   163401
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)