BAC Information

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BAC

Clone NameMSMg01-116C23
Chromosome17 (Build37)
Map Location 17,997,744 - 17,998,071
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2, Lix1, LOC383297, Lnpep, EG665140, LOC100041519, EG626942, 4930546H06Rik, Has1
Downstream geneFpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114, EG433070, Vmn2r-ps115, Vmn2r-ps117, LOC100042183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116C23.T7 (MSMg01no116_c23.b1)MSMg01-116C23.TJ (MSMg01no116_c23.g1)
ACCAG327628AG327629
length733739
length of high quality
(start - end)
384 (77 - 460)37 (164 - 200)
definitionCHROMAT_FILE: MSMg01no116_c23.b1 PHD_FILE: MSMg01no116_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:22 2005CHROMAT_FILE: MSMg01no116_c23.g1 PHD_FILE: MSMg01no116_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGAGAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGTGCAGTTTCCCATGTAGGAGCTTGAAGAAGAAACCATG
AAAGACTGTCACTAGACTGGATCACTTGTAGACTCATGGTTAGTTAGAAG
TATTCTCAGCCCATGTCCACCTTCCTTTGGATACCACCTACAGTGGTGTG
GGCTCTCCTACATCAATCATTTGTCAAGATGTTCTCTGTCAACCATGGCC
TCAAGCCAATCTGATCTAGAGGCTCTCCTCTCAAGTAACTCTAGACTGTA
TATAGTTGACACTGTAAGCTAACTATGACAAGAGGTAACTGGGGAAAAGT
ATACAAAGTAGGTACCCAGTTGGTAGGCATGTCTTCCTGTGGTTAGAACT
TCCTTGCAATTAAACATTCTTAAAGCAGTTAGGTTGTTCTCCTCATATTA
GAAACTAAGACAAGGTGAGGAGAAAGAAGGGGCATGAGATGGGGGCATTG
TGGAGGGGCAACATGCAGGGAAGAGGGTTACCATTTGAAATGTAAATGAA
TAAAATGATTACATACATATATAACTAGAAACTAAGACACCTGGCGAATT
TCTCTAATACCCTGCGTACGATACAAGGTCTTATCACACCTTCTATAACA
TTACCCACCCCCTAAATCCCCTTTTCCCCCCTACTCCGCTATTGTACATA
TGTGCATATTTTTATATATATTATCATATTACA
TAAACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCTTTCATCCCCGGAATTCTCATGTAGCTTAGATAGCCACTAGCTAG
ATGGCAGATGAGTCTGCACTCTCCACGTCTTCTTTGATATACAGCATACA
GACCATGTGCTATGAGAGCTGACTATCCAATCTGATGTAATTTGCTAACC
AATCACAGTCCATAAACTTTCAATATATAAGTGTTTGCTTTGCTCCACAT
AAAACAAAGCAGACCTAGTTTCCTGAAACTGTCCCCCGGAGTGGTTTATA
TCTGCATTGTTTATGAACCCCCGGGCATACCTATCTTTTTGGAGCACACC
ACTGTTTGGATGCCATCGCCCCTATATCCCATATGCACGAAATCCAGATG
TCTGATCCTGCCTTATTAAGAACATGCTACTTTTATGTTAAATAACTTAC
CGCAATAACACCTATTTGAACTTACATGCCCGTACTATTTGTTCACTATA
ATCCCAGCGAATCCCCCAAGTGTCCCATAGCGCCTGCCCCGCCTTAACCC
CTGCCCCTACCATCTACCCGGTACTGGCTCCCATGCGCCCTGTAATGCCA
CTTTACACAACCATTTGTTATTCTCCTTTCCTACTTCCCTTGGGCACCAA
TTTTTTCCTTCCCCTCTACGATGTACCACCTGAACATAATCTATTCTCCC
AGCAACAACACCTTTTTATCCACACAAAAAATCTGTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_c23.b1 MSMg01no116_c23.b1 CHROMAT_FILE:
MSMg01no116_c23.b1 PHD_FILE: MSMg01no116_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:22 2005
         (384 letters)



>mm_chr17_17997290_17998073
          Length = 784

 Score =  634 bits (328), Expect = 0.0
 Identities = 328/328 (100%)
 Strand = Plus / Minus

                                                                       
Query: 57  ctcatggttagttagaagtattctcagcccatgtccaccttcctttggataccacctaca 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 ctcatggttagttagaagtattctcagcccatgtccaccttcctttggataccacctaca 723

                                                                       
Query: 117 gtggtgtgggctctcctacatcaatcatttgtcaagatgttctctgtcaaccatggcctc 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 gtggtgtgggctctcctacatcaatcatttgtcaagatgttctctgtcaaccatggcctc 663

                                                                       
Query: 177 aagccaatctgatctagaggctctcctctcaagtaactctagactgtatatagttgacac 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 aagccaatctgatctagaggctctcctctcaagtaactctagactgtatatagttgacac 603

                                                                       
Query: 237 tgtaagctaactatgacaagaggtaactggggaaaagtatacaaagtaggtacccagttg 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tgtaagctaactatgacaagaggtaactggggaaaagtatacaaagtaggtacccagttg 543

                                                                       
Query: 297 gtaggcatgtcttcctgtggttagaacttccttgcaattaaacattcttaaagcagttag 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gtaggcatgtcttcctgtggttagaacttccttgcaattaaacattcttaaagcagttag 483

                                       
Query: 357 gttgttctcctcatattagaaactaaga 384
           ||||||||||||||||||||||||||||
Sbjct: 482 gttgttctcctcatattagaaactaaga 455


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)