BAC Information

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BAC

Clone NameMSMg01-116L04
Chromosome17 (Build37)
Map Location 84,593,720 - 84,756,019
singlet/doubletdoublet
Overlap geneThada
Upstream geneAW548124, EG545226, Eml4, Cox7a2l, Kcng3, Mta3, Haao, Zfp36l2
Downstream genePlekhh2, Dync2li1, Abcg5, Abcg8, Lrpprc, LOC668848, 1110020A21Rik, Ppm1b, Slc3a1, Prepl, LOC100043901, 1700106N22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116L04.T7 (MSMg01no116_l04.b1)MSMg01-116L04.TJ (MSMg01no116_l04.g1)
ACCAG328014AG328015
length717713
length of high quality
(start - end)
544 (52 - 595)243 (78 - 320)
definitionCHROMAT_FILE: MSMg01no116_l04.b1 PHD_FILE: MSMg01no116_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:01 2005CHROMAT_FILE: MSMg01no116_l04.g1 PHD_FILE: MSMg01no116_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,593,720 - 84,594,259)(84,755,777 - 84,756,019)
sequence
TTTCCTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTTCTTTATCCTCTTGACTTCCGGGCTTTCTGAGGGTAA
GGTGCTGAAAGAGCAAGTATACAAAGAGGAAGTAGGTATCTTGGGAGGGG
GGACCCCTGCTTACTTGTCTGCCTGGACTAAAAGTGGAGTTTTGAGCAGG
GTTGGGCGTTGACACTTTTGCCATTGGTTTAAGCCTTCTCATCTCAGCAA
GAGGGAACCTGAAGACTTAAGGTTTTCAACTCAGAGTGGGTCTCTGTGGA
AGCCCCCTGCACTACTGCCTCCATCTAACGAGTACTTCTACTGAACCCTC
CTATCTCCCAAATCCAGTTCTGCTCAGCCCAGAGAATGTTCCTGGCCATC
TGACAACCAGCTGAACCTGCTCTGCACACTCAGGAAAGGGCTGAAATGTG
GACTAGAAGGCCAGTCCCCAGTGGTTAGCTGGGCTATGGAAGGCCTGTGG
CACTTGTAGCCCTACTGAAGGGAGCTAGGCTTTTTTTGGTGGTGCCAGGC
CTTATGCATGCCAGCCAAGTTTTGTGCCACCAAGCCGTATCCTCAGCCCC
CAGCAGCTAAGGACTGGATGTTACTAATTCTGCCTCACACATGAGGATAT
CAGAGCTGAAGCTACTACTGTACAGTCACAGAACTCCAAGGGGCTCTGAG
GAAACAGAATTGCCGAC
CTTTACGATGAAGTGAGAGGCCTGGNGGCGCCTGGTTCCGACTTGGGGTG
AACTATAGAAGGTTTCCAAAACAGCTCTGGACTGAGATAGACAGCACTAA
GCAGGAACTTGGTTAATTCTGTGCCCAGGAGACTCATACTGTATACTGAA
TACTTGGAGTTCCCTTTCACTTAGTAGTTGGGAACTAACTCCGCAGACAT
CACATCCCACTAGGTATGGACAACATCGAAGTAGAGTAGCATTTACCCAG
TGTGTTTGTTTGTTTGTTTCCTTGCTTTGTTTGTAAATAAATCTTGGTCT
TTGAATCCCCAGACTTTTTTACATAGTTTTGGGGGAAATGAAGCATCGAG
CCTGATTAATATTTTATGCCCGCCCCCGGCCCCATTCTGATCTAATGTGT
GTGAAAGTTAGAAGTTTGGGGGGAAACAAGTTGCAAGGCCTTCTCTTAGG
AGCAAAAGGAGGCCAGGCTGAGGATCGCCTTCACACCCCTCCTTTCAGCA
GAACAGCTGTGCTTTGTTTTAGTGTAGTAATTCGTGCTGCCATGATAGCA
TGCACACAACAGGTTTTACCATCTCTACCATTTGTTAGCGCACAGCTGAG
TGATTATGATAGAAGCCTCTTTCTTTTACTCTCAGCATTTCCTTGGTTGC
CTGAAGGTTTTTTATGATTTTCGCCTTATAACCCAAACAATTTCAGCCCC
TAACCCAGCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_l04.b1 MSMg01no116_l04.b1 CHROMAT_FILE:
MSMg01no116_l04.b1 PHD_FILE: MSMg01no116_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:01 2005
         (544 letters)



>mm_chr17_84593516_84594459
          Length = 944

 Score = 1013 bits (524), Expect = 0.0
 Identities = 536/540 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttctttatcctcttgacttccgggctttctgagggtaaggtgctgaaagagca 64
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaatcccttctttatcctcttgacttccgggctttctgagggtaaggtgctgaaagagca 264

                                                                       
Query: 65  agtatacaaagaggaagtaggtatcttgggaggggggacccctgcttacttgtctgcctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtatacaaagaggaagtaggtatcttgggaggggggacccctgcttacttgtctgcctg 324

                                                                       
Query: 125 gactaaaagtggagttttgagcagggttgggcgttgacacttttgccattggtttaagcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gactaaaagtggagttttgagcagggttgggcgttgacacttttgccattggtttaagcc 384

                                                                       
Query: 185 ttctcatctcagcaagagggaacctgaagacttaaggttttcaactcagagtgggtctct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttctcatctcagcaagagggaacctgaagacttaaggttttcaactcagagtgggtctct 444

                                                                       
Query: 245 gtggaagccccctgcactactgcctccatctaacgagtacttctactgaaccctcctatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 gtggaagccccctgcactactgcctccatctaacgagtacttctactgaactctcctatc 504

                                                                       
Query: 305 tcccaaatccagttctgctcagcccagagaatgttcctggccatctgacaaccagctgaa 364
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcccaaatccagttcagctcagcccagagaatgttcctggccatctgacaaccagctgaa 564

                                                                       
Query: 365 cctgctctgcacactcaggaaagggctgaaatgtggactagaaggccagtccccagtggt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cctgctctgcacactcaggaaagggctgaaatgtggactagaaggccagtccccagtggt 624

                                                                       
Query: 425 tagctgggctatggaaggcctgtggcacttgtagccctactgaagggagctaggcttttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tagctgggctatggaaggcctgtggcacttgtagccctactgaagggagctaggcttttt 684

                                                                       
Query: 485 ttggtggtgccaggccttatgcatgccagccaagttttgtgccaccaagccgtatcctca 544
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 685 ttggtggtgccaggccttatgcatgccagccaagttctgtgccaccaagccgtatcctca 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no116_l04.g1 MSMg01no116_l04.g1 CHROMAT_FILE:
MSMg01no116_l04.g1 PHD_FILE: MSMg01no116_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:01 2005
         (243 letters)



>mm_chr17_84755645_84756287
          Length = 643

 Score =  439 bits (227), Expect = e-128
 Identities = 239/243 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggactgagatagacagcactaagcaggaacttggttaattctgtgcccaggagactcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||
Sbjct: 375 tggactgagatagacagcactaagcaggaacttggttaattctgtggagaggagactcat 316

                                                                       
Query: 61  actgtatactgaatacttggagttccctttcacttagtagttgggaactaactccgcaga 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 actgtatactgaatactcggagttccctttcacttagtagttgggaactaactccgcaga 256

                                                                       
Query: 121 catcacatcccactaggtatggacaacatcgaagtagagtagcatttacccagtgtgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 catcacatcccactaggtatggacaacatcgaagtagagtagcatttacccagtgtgttt 196

                                                                       
Query: 181 gtttgtttgtttccttgctttgtttgtaaataaatcttggtctttgaatccccagacttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gtttgtttgtttccttgctttgtttgtaaataaatcttggtctttgaatccccagacttt 136

              
Query: 241 ttt 243
           |||
Sbjct: 135 ttt 133


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)