BAC Information

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BAC

Clone NameMSMg01-117D15
Chromosome17 (Build37)
Map Location 14,309,768 - 14,310,300
singlet/doubletsinglet
Overlap genenone
Upstream geneUnc93a, Smok2a, Smok2b, LOC667359, LOC100041352, LOC667372, LOC667384, Smok4a, Tcte2, Mllt4, LOC100041464, EG635895, EG664821, EG664831, 4930488N24Rik
Downstream geneDact2, Smoc2, LOC664856, Thbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117D15.T7 (MSMg01no117_d15.b1)MSMg01-117D15.TJ (MSMg01no117_d15.g1)
ACCAG328413AG328414
length736731
length of high quality
(start - end)
512 (72 - 583)530 (69 - 598)
definitionCHROMAT_FILE: MSMg01no117_d15.b1 PHD_FILE: MSMg01no117_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:42 2005CHROMAT_FILE: MSMg01no117_d15.g1 PHD_FILE: MSMg01no117_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAGATCCGCGGA
ATTCTTTGTTCATTCTCTGAGCCCCATCTTTTTTTTTTTTTTTCTTTCCA
TTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAG
TCCCCCATACCCACCCACCCCCACTCCCCTACCCGCCCACTCCCCCTTTT
TGGCCCTGGCGTTCCCCTGTTCTGGGGCATATAAAGTTTGTGTGTCCAAT
GGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATG
CAGCTAGAGTCAAGAGCTCCGGGTTACTGGTTAGTTCATAATGTTGATCC
ACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTC
CTCCGTTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGGGCATCCAC
TTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACTTCT
GGGTCCTTTCGATAAAATCTTGTTAGTGTATGCAATGGTGTCAGCGTTTG
GATGCTGATTATGGGGTGGATCCCTGGATAAGGCAGTCTCTACATGGTCC
ACCCTTTAATCTCAGCTCCAAACTTTGTCTCTGTAACTCCTTCCAAGGGT
GTTTTGTTCCCACTTCTTAGGAGGGGCATAGTGCCCACACTTCAGTCCTT
CATTTTTTCTGAGTTTCATGTGTTTAGGAAATTGGA
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTCTTCTAGTCCCAGGCTGGCCAGATCCTTG
ACCAAAACATCCTTACACAGTTCTCAGCCCCATGTAGATTCTCCAACAAG
CTATGGCTTTCAGTCCCCAGAGAAGGTAAAAACTTCACAGAGATGAGATA
TGCCCGGCTCTGAGGAGGACACGGTGACAGTGGTCCCTCCCTCCAGATTT
CTGAAAGGCAACACAGGTCCCAACAGGTGAGGATGGAGAGAATTGTGTGG
AGGAAGGGCTGGCATTGCTATTTCCCACTCCTTGGACACTTTCCCCACCA
AGCCCAGGCACTGCTGAGTTTCCTGGCTCTCTGAAGGAGTGTCTTGGACT
CTCCAGGATGTGGTTGCAGCTAGAGGTGAATCAGCTACAGCAGGAGTCTC
TATGAAGGCACTGGGGCTGGGGGAGGAAACCTGAGGCTATTGGTCCTCTT
GAGCTCTCAGGAAATAAGCATTAACTGTTGAGGGGCTCCGACCTACTTTG
TTCCTTCATTAGGAATTGTAGGAAGCTCCTCTCCTCTGGAGAGTTTGGAA
ACAGACATGATGGCACAGGCCTTTTAGCCCAGTTGTTTCAGTATGAGGAA
GGCAGATCTATCTCCAAGACTGTGACTTCCATGCCATCTTAGGCAACTTC
ATGAGACCCTGTCTTATAGCAAAAGTAAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_d15.g1 MSMg01no117_d15.g1 CHROMAT_FILE:
MSMg01no117_d15.g1 PHD_FILE: MSMg01no117_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:42 2005
         (530 letters)



>mm_chr17_14309568_14310500
          Length = 933

 Score =  961 bits (497), Expect = 0.0
 Identities = 523/533 (98%), Gaps = 3/533 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcttctagtcccaggctggccagatccttgaccaaaacatccttacacagttctcagc 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tttcttctagtcccaggttggccagatccttgaccaaaacatccttacacagttctcagc 674

                                                                       
Query: 61  cccatgtagattctccaacaagctatggctttcagtccccagagaaggtaaaaacttcac 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 673 cccatgtagattctccaacaagctatggctttcagtccccagacaaggtaaaaacttcac 614

                                                                       
Query: 121 agagatgagatatgcccggctctgaggaggacacggtgacagtggtccctccctccagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 agagatgagatatgcccggctctgaggaggacacggtgacagtggtccctccctccagat 554

                                                                       
Query: 181 ttctgaaaggcaacacaggtcccaacaggtgaggatggagagaattgtgtggaggaaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ttctgaaaggcaacacaggtcccaacaggtgaggatggagagaattgtgtggaggaaggg 494

                                                                       
Query: 241 ctggcattgctatttcccactccttggacactttccccaccaagcccaggcactgctgag 300
           |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 493 ctggcattgctagttcccactccttgggcactttccccaccaagcccaggcactgctgag 434

                                                                       
Query: 301 tttcctggctctctga---aggagtgtcttggactctccaggatgtggttgcagctagag 357
           ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tttcctggctctctgaaggaggagtgtcttggactctccaggatgtggttgcagctagag 374

                                                                       
Query: 358 gtgaatcagctacagcaggagtctctatgaaggcactggggctgggggaggaaacctgag 417
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 373 gtgaatcagctacagcaggagtctctatgaaggcactggggttgggggaggaaacctgag 314

                                                                       
Query: 418 gctattggtcctcttgagctctcaggaaataagcattaactgttgaggggctccgaccta 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 313 gctattggtcctcttgagctctcaggaaataagcattaactgttgaggggctctgaccta 254

                                                                
Query: 478 ctttgttccttcattaggaattgtaggaagctcctctcctctggagagtttgg 530
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 253 ctttgttccttcattaggaattgtaggaagctcccctcctctggagagtttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 933
Length adjustment: 10
Effective length of query: 520
Effective length of database: 923
Effective search space:   479960
Effective search space used:   479960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)