BAC Information

Click to search

BAC

Clone NameMSMg01-118D08
Chromosome17 (Build37)
Map Location 53,575,110 - 53,575,250
singlet/doubletsinglet
Overlap geneEfhb
Upstream geneEG328839, Kcnh8, LOC668506, EG629036, LOC668512
Downstream geneLOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1, LOC100043829, EG435531, Slc5a7, LOC668529, 1700025K24Rik, Trp53-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118D08.T7 (MSMg01no118_d08.b1)MSMg01-118D08.TJ (MSMg01no118_d08.g1)
ACCAG329143AG329144
length768747
length of high quality
(start - end)
159 (74 - 232)73 (73 - 145)
definitionCHROMAT_FILE: MSMg01no118_d08.b1 PHD_FILE: MSMg01no118_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:59 2005CHROMAT_FILE: MSMg01no118_d08.g1 PHD_FILE: MSMg01no118_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAA
TTCCACTATAATTTCCACTGGAATGCCAATTCACTATCATCCTTCTACCT
CGGGCTGCTAGTTTACAGATATGACTCATCACACACAGACTAACTCTGAA
CTTCTAAGGATACTTATTAGTTGAATGTTGGGCCTATATAAATGTGTATG
TGTGTGTGTGTGTGTGTGTGTGAAAGAGAGAGAGACTTTTATCCCTCACA
CCCATTCTTTCCCTCCTTTTTTTCCTCCTCTTCTTTCCATTTCAACACTT
TTTTATTCTTATTCTTTTTTTGTATCTTTCTTCTTTCTTCACCATACATA
TACACTACTTTTTTTTCCCCTTTCCCTCACATTCCCCTTTCCCCTTTTTC
CATTTTCCTCCCCTTTTTTTTTTTTTTTCTTTCCCCCCCTTCCTTTTCCC
CCACCCCCTTTTTTTTTCCTCTTTTCCCCCCTTACCCTCCTTTTCCCCTT
TTTCCCTCCCCCCCCCTTTCCTTTTTTTTTTACCTTCCCCACCCCCCCTT
TCCATCCTTTTACCCCCCCTTTTCTTTTTTTTCCCCCCCCCTCTTTTTTT
TCCTTTTTTTCCCCTTTCCTCCCTTTCTTTCCCCCTTCCCCCTTTCCCTA
TTTTTTCCCCCCCCCCTTTTTCTTTTTTTATACCCCCTTCTTTCCTTTCC
CTTTCCCTTTCTCCCCCTTCTTTTCCCTCCTTTTACTTCTTTTCTTCCCC
CTTTTTCCTCTTTCATCC
NCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCTGGTAGAATTTGCAGGGTTGCTAAGA
CGATTGATGTGGGGTTTTTTTTTTTTGGTATATATGTATTTCTCTGCCTT
TGCCTGGCTGGTTGTATTTCCTCTTCGCTTCGTTTGCCTCACTATCCTCT
TTACCCTCCCTCTGCCATATACCCTATTTCTTTACCCACCATTCCCCATA
CTCATTATTCTCCTTACCTCCGCGTCCTATCCCACCCGTCCCTTTTTTTC
CATCCTTCCCCCATTATTTTTTTTCTTCCCACCCCCCTTCCCTTTTCCTT
TCCCTTTCTCCTTCCTCCTTTCCCCTCATACTCTTTATTTCACCTTCTTA
CTCACCTTCCTTTCACTCAGTATCTACATCCATACTCCCTTTCCTTTTTC
CTTTTAATCCACATACTTCTTCATAACAAAAATAATACAAACATTTTTAC
CCATACTCTCTACCTCCTACCCTATTAATTTCATCTTATCTCTAATTCCT
ATTCTTCCCCACCCCCCCACCCTTCCACCTTTTCTTTTTAACTCCACTCC
ACACCTTTCACCTTATCCTATTCCACTCCCCCCCACTACCCTACCATCTT
AATCTCCTCCCCTTTTTTTTTGTATCTTCATACACCCAAACATATTTAAA
CCCCACTTCAATCCCTATCATTCCTACCTACCATCTAACCATATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_d08.b1 MSMg01no118_d08.b1 CHROMAT_FILE:
MSMg01no118_d08.b1 PHD_FILE: MSMg01no118_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:59 2005
         (159 letters)



>mm_chr17_53574910_53575468
          Length = 559

 Score =  273 bits (141), Expect = 4e-78
 Identities = 141/141 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgccaattcactatcatccttctacctcgggctgctagtttacagatatgactcatcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgccaattcactatcatccttctacctcgggctgctagtttacagatatgactcatcaca 260

                                                                       
Query: 61  cacagactaactctgaacttctaaggatacttattagttgaatgttgggcctatataaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacagactaactctgaacttctaaggatacttattagttgaatgttgggcctatataaat 320

                                
Query: 121 gtgtatgtgtgtgtgtgtgtg 141
           |||||||||||||||||||||
Sbjct: 321 gtgtatgtgtgtgtgtgtgtg 341


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 559
Length adjustment: 8
Effective length of query: 151
Effective length of database: 551
Effective search space:    83201
Effective search space used:    83201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)