BAC Information

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BAC

Clone NameMSMg01-118G13
Chromosome17 (Build37)
Map Location 34,224,748 - 34,224,913
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa
Downstream geneH2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118G13.T7 (MSMg01no118_g13.b1)MSMg01-118G13.TJ (MSMg01no118_g13.g1)
ACCAG329290AG329291
length740708
length of high quality
(start - end)
162 (74 - 235)246 (71 - 316)
definitionCHROMAT_FILE: MSMg01no118_g13.b1 PHD_FILE: MSMg01no118_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:15 2005CHROMAT_FILE: MSMg01no118_g13.g1 PHD_FILE: MSMg01no118_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGTGAGGAGGCGCGGAATTC
CAAACCATTTCAATGGACTACATAGTGAAAGTCTGTCCAAGAAAAAAAAA
AAAAAAAGGAAGGATAGACAGACAGACAGGACAGGACAGGCTTCTCATTG
TAAGGCTACAAGCTAGGAGAAGTCCCAGACTTCTGCACACAGGAGGCAGC
AAGTTTTGGTAGGAGAGTGAGAGGTGGTGAGGTGGGAGGGCCATCTCCTC
TTTCCATTTCTTTCTCTTTCTTTTTTATTCTTACGTTCTCCTTTTTCCTC
GTATTCGGATCCCCTCTTTTTTTTTTTCCCCTCACCCCTATTCCTCCACC
ATCTATCTCTTTCCTTCCCTCTCCCTTTTTCTTTTTTTTTTCTCTTTCTT
TATCCTTCTTTGTTCCCCCTCTTTTTTTTTTTCCCTTTTCTTCTGTTTTC
TCTCTCTTTCTCCTTTTCTCTTTGTTCCTTGCCTTCTTCCTTGTTTTTTA
CCTATTCCCCTTCTTTCTCTCCTTACTCTTTATTATTTCTTCTCCCTTTT
CTTTCTCTCCTTCCTATCTTTTTCTTTTTTCCTCTTACCTTCTCTACCTC
CTTCTCCTCTTTCACTCTCTCCTACCTATACTACTTCTATTCCTTTTTTT
ACTCTCTCTATTCCCATTCCTCCTTTTTCCTTTTTTATCCTCCTCTTACT
TTCCCCTCGTCTTCTTTCCTGGTTTCCCTTCCTGTTCCGG
AATGAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGGTCGGGATTGGAGAGATGGCTCAGAGA
CTGACAGCATTAAGGGCTCTTCCTGAGTTGAAGTCTCAGATCACGTGGCG
GCTCACAATCATCTATAATGAGATCTGGCGCCCTCTACTGGCAGACAGGC
ACATACGCAGGCAGAACAATGTACCTAATGAATAAATAAATCTTAAAAAA
AAAAAAGAAATTCAAGGTCAACCTGAGCTACAACAAGGCATACAACACAA
ACAGCCTAAATGAACGATCATCCACGCTCCATAGACCAGTAGCATCATAG
GCCACTCTGTATTTTGACCCCCTCCCCATTTCTTCCTTCCCTTGCTGAAT
CCCTAAGATCAGTGCGTCCATCAAATGCAGGGTACCCTACAGTCCTGCAG
TACTGTTTGGAGCTGTTCCTACATGATGTAGTGACCCCAAATATTGTCCA
AGGATCTCTTTCATTATAGAAATCTTATTTCCCTCCATTTCATTTTTTAA
TATAAAAAATACTTTTATGTATACAGGTGTTTTGCCTCCATGTATGTCCG
TGCACCTCGTGCATTGAGTGCCCAACGATACCATAATAGGACGCCCTAGC
CCCTCTGATACTGGTAGTTCAAGTGTGTGAAATTCTGGGAACTGATCCCA
TGTCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_g13.b1 MSMg01no118_g13.b1 CHROMAT_FILE:
MSMg01no118_g13.b1 PHD_FILE: MSMg01no118_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:15 2005
         (162 letters)



>mm_chr17_34224548_34225113
          Length = 566

 Score =  277 bits (143), Expect = 3e-79
 Identities = 159/167 (95%), Gaps = 6/167 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgaaagtctgtccaagaaaaaaaaaaaaaaaaggaaggatagacagaca-----gaca 55
           |||||||||||||||||| ||||||||||||||||||||||||||||||||     ||||
Sbjct: 366 agtgaaagtctgtccaag-aaaaaaaaaaaaaaaggaaggatagacagacagacaggaca 308

                                                                       
Query: 56  ggacaggacaggcttctcattgtaaggctacaagctaggagaagtcccagacttctgcac 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ggacaggacaggcttctcattgtaaggctacaagctaggagaagtcccagacttctgcac 248

                                                          
Query: 116 acaggaggcagcaagttttggtaggagagtgagaggtggtgaggtgg 162
           ||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 247 acaggagacagcaagttttggtaggggagtgagaggtggtgaggtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 566
Length adjustment: 8
Effective length of query: 154
Effective length of database: 558
Effective search space:    85932
Effective search space used:    85932
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)