BAC Information

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BAC

Clone NameMSMg01-118H01
Chromosome17 (Build37)
Map Location 19,956,707 - 19,957,278
singlet/doubletsinglet
Overlap genenone
Upstream geneVmn2r-ps117, LOC100042183, EG627367, EG224552, LOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273
Downstream geneLOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118H01.T7 (MSMg01no118_h01.b1)MSMg01-118H01.TJ (MSMg01no118_h01.g1)
ACCAG329313AG329314
length715696
length of high quality
(start - end)
592 (66 - 657)571 (74 - 644)
definitionCHROMAT_FILE: MSMg01no118_h01.b1 PHD_FILE: MSMg01no118_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:17 2005CHROMAT_FILE: MSMg01no118_h01.g1 PHD_FILE: MSMg01no118_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:17 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNCCCATCCTTGNGNGAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCGCGGAATTCTCACCTGTACAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGCATCC
AGCAATACCTCTCCTGGGCTAAATCCAGAAGATGCCCTAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTTAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGT
GGATATTAGCCCAAAACCTAGGATATCGAAGATATAAGATACAATTTCTT
AAACACATGAAACTC
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTCACTTTTCTGGGTGTTTGGAAGATC
ATTTACTACTTGCTAAAATATTTATCAGAGGGTTAGTATCTGAAACTTCA
AATACATTCTCTCTCTCTTCTCATCAAAATTTTAATGTTTCAGACATGGA
GTGAGTATCTCTATTCTGATTTGAATTTTTCTGTGCACTGGTTGAGAGAT
ACACCAATAATTTCATATTGCAGGCAGATGAACAGTTTTTTTCTTCAGTG
ATTCTTTGTTATAGAGTTTTGTCACTATGGTAAGTTTTTGATTTCTTCAA
AAAAAAGTGTAAACTTTAGCTGTTCATTTCAGTTCTGAGACAGGGTCTCT
GACTATAACTCTCACTAATTAGTACTTCTCTTGTGTCCACAGGAAAAATT
TCTAGGATTGTGAAACTTTTGATTTGGGGAAGAGGAATAGACTCACAAAA
GTATAGAAATCTATCTCATAAGTATGCATCAAAGTGGGCTTGGAGCAGGA
GCAAGTGTTTCTACTAAGCTAGTATATCTTTAGTAAGTTTTGTCTGGAAA
GGGGTATTCAAGGAGGCATAATACTCCATTTGGAACTCTGAGGTACATGG
ACCCTTCAGAAGACATAATCCAGAAAAATAAGATATACTATTGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_h01.g1 MSMg01no118_h01.g1 CHROMAT_FILE:
MSMg01no118_h01.g1 PHD_FILE: MSMg01no118_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:17 2005
         (571 letters)



>mm_chr17_19956507_19957478
          Length = 972

 Score = 1013 bits (524), Expect = 0.0
 Identities = 560/572 (97%), Gaps = 1/572 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcacttttctgggtgtttggaagatcatttactacttgctaaaatatttatcagagggt 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 772 ttcacttttctgggtgtttggaagatcattcactacttgctaaaatatttatcagagggt 713

                                                                       
Query: 61  tagtatctgaaacttcaaatacattctctctctcttctcatcaaaattttaatgtttcag 120
           ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 712 tagtatctgaaacttcaaatacattctctctcttttctcatcgaaattttaatgtttcag 653

                                                                       
Query: 121 acatggagtgagtatctctattctgatttgaatttttctgtgcactggttgagagataca 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 652 acatggagtgagtatctctatcctgatttgaatttttctgtgcactggttgagagataca 593

                                                                       
Query: 181 ccaataatttcatattgcaggcagatgaacagtttttttcttcagtgattctttgttata 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 592 ccaataatttcatattgcaggcagatgaacagttttttacttcagtgattctttgttata 533

                                                                       
Query: 241 gagttttgtcactatggtaagtttttgatttcttc-aaaaaaaagtgtaaactttagctg 299
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 532 gagttttgtcactatggtaagtttttgatttcttcaaaaaaaaagtgtaaactttagctg 473

                                                                       
Query: 300 ttcatttcagttctgagacagggtctctgactataactctcactaattagtacttctctt 359
           |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 472 ttcatttcagttttgagacagggtctctgactataactttcactaattagtacttctttt 413

                                                                       
Query: 360 gtgtccacaggaaaaatttctaggattgtgaaacttttgatttggggaagaggaatagac 419
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 412 gtgtccacaggaaaaatttctatgattgtgaaacttttgatttggggaagaggaacagac 353

                                                                       
Query: 420 tcacaaaagtatagaaatctatctcataagtatgcatcaaagtgggcttggagcaggagc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tcacaaaagtatagaaatctatctcataagtatgcatcaaagtgggcttggagcaggagc 293

                                                                       
Query: 480 aagtgtttctactaagctagtatatctttagtaagttttgtctggaaaggggtattcaag 539
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 292 aagtgtttctactaagctagtatatctttagtaagtcttgtctggaaaggggtattcaag 233

                                           
Query: 540 gaggcataatactccatttggaactctgaggt 571
           ||||||||||||||||||||||||||||||||
Sbjct: 232 gaggcataatactccatttggaactctgaggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 972
Length adjustment: 10
Effective length of query: 561
Effective length of database: 962
Effective search space:   539682
Effective search space used:   539682
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)