Query= MSMg01no118_h13.b1 MSMg01no118_h13.b1 CHROMAT_FILE:
MSMg01no118_h13.b1 PHD_FILE: MSMg01no118_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:20 2005
(285 letters)
>mm_chr17_71712690_71713374
Length = 685
Score = 484 bits (250), Expect = e-141
Identities = 277/286 (96%), Gaps = 1/286 (0%)
Strand = Plus / Plus
Query: 1 tatgcagcgaaaccctgtcttgaaacccactctccaaaaatttataaaccctctataaaa 60
|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 201 tatgcagcgaaaccctgtcttgaaacccaccctccaaaaatttataaacagtctataaaa 260
Query: 61 tgacatgtcaacttcatttctattactgtgtactgtcttatatgaatatagaaatatgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacatgtcaacttcatttctattactgtgtactgtcttatatgaatatagaaatatgta 320
Query: 121 tcacaggtaatacatggttcttaataaatttctcaaaatttgaagcatattataaaatgt 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 tcacaggtaatacatggttcttaataaatttctcaaaatttgaagtatattataaaatgt 380
Query: 181 ctaaataacttta-aatttcattttatacgtatgagtattttgcctgcatgcttatatgt 239
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaaataacttttcaatttcattttatacgtatgagtattttgcctgcatgcttatatgt 440
Query: 240 gcactatttttttgcctggtgcctgtagaggcctaaagagggtgtt 285
|||||| || | ||||||||||||||||||||||||||||||||||
Sbjct: 441 gcactacttgtgtgcctggtgcctgtagaggcctaaagagggtgtt 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no118_h13.g1 MSMg01no118_h13.g1 CHROMAT_FILE:
MSMg01no118_h13.g1 PHD_FILE: MSMg01no118_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:20 2005
(588 letters)
>mm_chr17_71861453_71862440
Length = 988
Score = 1098 bits (568), Expect = 0.0
Identities = 583/588 (99%)
Strand = Plus / Minus
Query: 1 attttgttctaatgtggaaatcatttatgaattacttgatatgtgtatatataattaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 attttgttctaatgtggaaatcatttatgaattacttgatatgtgtatatataattaaac 729
Query: 61 acgtaaatgaatctactcaaataaatattatgtacccaagtgtcaggcaccaaacgtaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 acgtaaatgaatctactcaaataaatattatgtacccaagtgtcaggcaccaaacgtaga 669
Query: 121 gtaatgaggaacagaaaaccttggtctcaggagctcgtattctgttaggtagaaaggaat 180
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gtaatgaagaacagaaatccttggtctcaggagctcgtattctgttaggtagaaaggaat 609
Query: 181 gaaaattcagtgaggaactgtaggcaaacagcagcaggtgcggtggaagaaagcttaagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gaaaattcagtgaggaactgtaggcaaacagcagcaggtgcggtggaagaaagcttaagc 549
Query: 241 aggctaagggcaatgggacattccaggaggaaaatgaaaattgccagtacagaaggcagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aggctaagggcaatgggacattccaggaggaaaatgaaaattgccagtacagaaggcagc 489
Query: 301 atctgccacatccgtggtttggggaagcgagggaacaagctgctggaaacctggagagcg 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 488 atctgccacatccgtggtttggggaagcgagggatcaagctgctggaaacctggagagcg 429
Query: 361 ttgtgagtcgattctgatgaggtgttgggctttgtctgcagaggacttgtacaaggtaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttgtgagtcgattctgatgaggtgttgggctttgtctgcagaggacttgtacaaggtaga 369
Query: 421 tgcgtctaagctggagtcactcgaagcagaaaacaaagaactaaatgaacagattgcaag 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 368 tgcgtctaagctggagtcactcgaagcagaaaacaaagcactaaatgaacagattgcaag 309
Query: 481 actggaggaggaaagagaaagagaaccggttagtaaacatgtttctgaactcactggaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 actggaggaggaaagagaaagagaaccggttagtaaacatgtttctgaactcactggaca 249
Query: 541 gttctttagactcgtgagcctccttcagaggactctgatggaaggtgt 588
| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gctctttagactcgtgagcctccttcagaggactctgatggaaggtgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
