Query= MSMg01no118_n21.b1 MSMg01no118_n21.b1 CHROMAT_FILE:
MSMg01no118_n21.b1 PHD_FILE: MSMg01no118_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:51 2005
(626 letters)
>mm_chr17_52899161_52900189
Length = 1029
Score = 1002 bits (518), Expect = 0.0
Identities = 600/632 (94%), Gaps = 13/632 (2%)
Strand = Plus / Plus
Query: 5 gaattctccaattgttcctttttaaaagatattatgttatgaggtgctagcacaaaagaa 64
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 gaattctccaattgttgctttttaaaagatattatgttatgagatgctagcacaaaagaa 264
Query: 65 aggggagaaatggttcccggaacaaaaagacattgtgaatgaaagggtatagctggaatc 124
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggggagaaatggttcaaggaacaaaaagacattgtgaatgaaagggtatagctggaatc 324
Query: 125 agataaagaaaaggaagctagcacagactctgaacagagt-agaaggaggcttatggact 183
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 325 agataaagaaaaggaagctggcacagactctgaacagagtgagaaggaggcttatggact 384
Query: 184 ctgaacctgtcaaaactgagatatcagcaggagatgacagaaatccag---aggagagct 240
|||||||||||||||||| |||||| |||||||||| |||||||||| |||||||||
Sbjct: 385 gtgaacctgtcaaaactgacatatcaccaggagatgagagaaatccagagaaggagagct 444
Query: 241 gctaaattgaacctgattttcaagtagcccattgacaaccaaaaggaggg-tttcttagc 299
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 445 gctaaattgaacctgatttccaagtagcccattgacaaccaaaaggagggctttcttagc 504
Query: 300 aattcatcacatctcccagtcattcaagggtcccaaatcacacttcatattgattatatt 359
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 505 aattcatcacatctcccagtcattcaagggccccaaatcacacttcatattgattaaatt 564
Query: 360 gaggttagattactcagcttggattataatgtttattgtatttaatatgttattgtattt 419
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 565 gaggttagattactcagcttggattataatgtttattgtatttaatatg---ttgttttt 621
Query: 420 -aattttatctgttttcatttatacctgtgctctttgactttttgcaaatcaactccact 478
||||||||||||||||||||||| | ||||||||||||| ||||||||||||| |||||
Sbjct: 622 aaattttatctgttttcatttatatcagtgctctttgactctttgcaaatcaacgccact 681
Query: 479 agttttgatagacttgctgaccatattttaccagtactgattttaaatactttaagccta 538
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 agttttgatagacttgttgaccatattttaccagtactgattttaaatactttaagccta 741
Query: 539 gatattcgtaactgaaaatctcattgtctaccacatctgaagactccatgtataatttgc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gatattcgtaactgaaaatctcattgtctaccacatctgaagactccatgtataatttgc 801
Query: 599 tttttttttt----cttggcgcttctgctcag 626
|||||||||| ||||| ||||||||||||
Sbjct: 802 ttttttttttttttcttggtgcttctgctcag 833
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1029
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1019
Effective search space: 627704
Effective search space used: 627704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no118_n21.g1 MSMg01no118_n21.g1 CHROMAT_FILE:
MSMg01no118_n21.g1 PHD_FILE: MSMg01no118_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:51 2005
(643 letters)
>mm_chr17_52970471_52971513
Length = 1043
Score = 1197 bits (619), Expect = 0.0
Identities = 637/643 (99%)
Strand = Plus / Minus
Query: 1 tctgatgatgcagatcacaggtaattaattacattctgagataatttgcttcattgtctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 tctgatgatgcagatcacaggtaattaattacattctgagataatttgcttcattgtctt 784
Query: 61 catgccttatatagcacaattaaagactaacaataaagaaacaccgggtgtgttgcttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 catgccttatatagcacaattaaagactaacaataaagaaacaccgggtgtgttgcttct 724
Query: 121 ttgttttcagacttccaaagtatttcttctcccctcccactgacgagttatgtgtatgag 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 723 ttgttttcagacttccaaagtatttcttctcccctcccactgacaagttatgtgtatgag 664
Query: 181 ctgaaaagcaaggaagctaaacacgtttccctctgagttttattttctgtagagctatgt 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 663 ctgaaaagcaaggaagctaaacacatttccctctgagttttattttctgtagagctatgt 604
Query: 241 cattggaatgtccatagtcctaaataaaaggaaatggagggggtacatttgatacagcat 300
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 603 cattggaatgtccatagtcctaaataaaaggagagggagggggtacatttgatacagcat 544
Query: 301 aaattagtagattactttattagccttcatgacaggtgggaaataatttaaaagtcatat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aaattagtagattactttattagccttcatgacaggtgggaaataatttaaaagtcatat 484
Query: 361 tggcttacttgttaaaaagtaaattaaaatataatgatgtgcacaagaacacgtgcagtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 483 tggcttacttgttaaaaagtaaattaaaatataatgatgtgcacaagaacacgtgcactg 424
Query: 421 catgtaaataattactaactttatttaatgatttctttaaaaattaattgatgtggttga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 catgtaaataattactaactttatttaatgatttctttaaaaattaattgatgtggttga 364
Query: 481 tgtagcatgggtagaaagacatttaagtaaaccagctctggctgatgatctaaagatact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tgtagcatgggtagaaagacatttaagtaaaccagctctggctgatgatctaaagatact 304
Query: 541 ctgagtgtttccattgctcatgtgacactgcttttagcatagtgttttgtccaaggacat 600
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ctgagtgtttccattgctcgtgtgacactgcttttagcatagtgttttgtccaaggacat 244
Query: 601 ttggggggaaaggagtggagacaataagcagagaagagatgga 643
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ttggggggaaaggagtggagacaataagcagagaagagatgga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
