BAC Information

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BAC

Clone NameMSMg01-119P12
Chromosome17 (Build37)
Map Location 21,038,313 - 21,038,889
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7
Downstream geneV1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119P12.T7 (MSMg01no119_p12.b1)MSMg01-119P12.TJ (MSMg01no119_p12.g1)
ACCAG330456AG330457
length709703
length of high quality
(start - end)
662 (48 - 709)494 (76 - 569)
definitionCHROMAT_FILE: MSMg01no119_p12.b1 PHD_FILE: MSMg01no119_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:16 2005CHROMAT_FILE: MSMg01no119_p12.g1 PHD_FILE: MSMg01no119_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCCCTATAGCGAGGCATAGAAGCTTCACAGGACCAAGGGCCTCT
CTTCACATTGATGACTGACTAGGCCATCCTCTGCTACACATGCAGCTAGA
GCCACGAGTCCCACCATGTGTTTTCTTTGATTGGTGGTTTAGTCCCAGGG
AGCTCTGGGAGTACTGGTTAGTTCCTATTGTTGATCCTCCTACTGGGCTG
CAAACTCTTTCAGCTCCTTGGTTACTTTCTCTAGCTCCTTCATTGGGGAA
CCTGTGCTCCTGTGTACCTCCAGTGTTTGGCAATTCTTAAGATGCAAGGT
GACTATTTCTGTTCATAGATCTTCCATAGTAGATTCATCTTTAGAACTTC
CAGAGAGGGCATTCAAAATCTCAGCAAGATAAGAGCTATAGGTTGGTAGA
ACTTAAGAAGTTACCATACATGCTACCTTTCCATGTGCTTCTGTGTATTG
TAATCAATACCCTTCTTTGTATGATTTCATTATTTAAATTTATTTCTTCT
GGCACTTCATTTTTCCTCTGATTTCTCTAAGTTCCCATCTAGTATGGGGG
CCAGTTCTAGACATAAGAGACTTTGCCAAAGTGTCTGCCTCTATTATATC
ATGCAGTTTGTATGATTTTAAGTTCTTGAGGACCGTACAGCTCTCACAGT
TCTTGTTTT
NCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGTTCTGTACCCCATTTT
TAATTGGGGTTATTCCGTTCTCTGAAGACACCAAACCCAGACACTATTGC
TGACGCCAAGAAGCTCTTGCTGACAGACTGGTATAGCTGTCCCCTGTGAG
ACTCTACCGGAGACTGACCAATACAGAGGCAGATGTTTACAGCCAACCAT
CAGACTAAGCACAGGTACCTCAATGGGGAAGGATTGAAGGAGCTAAAAGG
GGTTTTCAACCCCACAAGAAGAAAAACAATATCAACTAACCAGAGACCCC
AGGAACTAAAACACCAACCAACAAGTACACATGGAGGGACCCATGGCACC
AACTGTATATGTAGCAAAGGATTGCCTAATCTGGCATCAATAGGAGGGGA
GGCCTTTGGTCCTGTGAAGACTTGATGCCCCATTATAGGGAAATGCTAGA
GCACTGAGGTGGGGGTTGGAGGGAAACACCCTTATAGAAGCAGGGGGATG
GGATGGGGGTTTGCAGAGTTAAAATCAAGAAGGGGGATAACAGTTGAAAT
GTAAATAAAAATACCACCATTTAATAGATAAGATCTGAACAAAACAGTCC
TTGCTTTGAAAAGTCTGCTTTAAATGTTACTCTTGCTCTGATTTTTCATT
GAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_p12.b1 MSMg01no119_p12.b1 CHROMAT_FILE:
MSMg01no119_p12.b1 PHD_FILE: MSMg01no119_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:16 2005
         (662 letters)



>mm_chr17_21037829_21038889
          Length = 1061

 Score = 1102 bits (570), Expect = 0.0
 Identities = 576/578 (99%), Gaps = 1/578 (0%)
 Strand = Plus / Minus

                                                                        
Query: 81   cctctgctacacatgcagctagagccacgagtcccaccatgtgttttctttgattggtgg 140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1061 cctctgctacacatgcagctagagccacgagtcccaccatgtgttttctttgattggtgg 1002

                                                                        
Query: 141  tttagtcccagggagctctgggagtactggttagttcctattgttgatcctcctactggg 200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1001 tttagtcccagggagctctgggagtactggttagttcctattgttgatcctcctactggg 942

                                                                        
Query: 201  ctgcaaactctttcagctccttggttactttctctagctccttcattggggaacctgtgc 260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941  ctgcaaactctttcagctccttggttactttctctagctccttcattggggaacctgtgc 882

                                                                        
Query: 261  tcctgtgtacctccagtgtttggcaattcttaagatgcaaggtgactatttctgttcata 320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881  tcctgtgtacctccagtgtttggcaattcttaagatgcaaggtgactatttctgttcata 822

                                                                        
Query: 321  gatcttccatagtagattcatctttagaacttccagagagggcattcaaaatctcagcaa 380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821  gatcttccatagtagattcatctttagaacttccagagagggcattcaaaatctcagcaa 762

                                                                        
Query: 381  gataagagctataggttggtagaacttaagaagttaccatacatgctacctttccatgtg 440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761  gataagagctataggttggtagaacttaagaagttaccatacatgctacctttccatgtg 702

                                                                        
Query: 441  cttctgtgtattgtaatcaatacccttctttgtatgatttcattatttaaatttatttct 500
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701  cttctgtgtattgtaatcaatacccttctttgtatgatttcattatttaaatttatttct 642

                                                                        
Query: 501  tctggcacttcatttttcctctgatttctctaagttcccatctagtatgggggccagttc 560
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 641  tctggcacttcatttttcctctgacttctctaagttcccatctagtatgggggccagttc 582

                                                                        
Query: 561  tagacataagagactttgccaaagtgtctgcctctattatatcatgcagtttgtatgatt 620
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581  tagacataagagactttgccaaagtgtctgcctctattatatcatgcagtttgtatgatt 522

                                                  
Query: 621  ttaagttcttgaggaccgtacagctctcacagttcttg 658
            ||||||||||||||||| ||||||||||||||||||||
Sbjct: 521  ttaagttcttgaggacc-tacagctctcacagttcttg 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1061
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1051
Effective search space:   685252
Effective search space used:   685252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)