BAC Information

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BAC

Clone NameMSMg01-120B08
Chromosome17 (Build37)
Map Location 70,848,321 - 70,848,706
singlet/doubletsinglet
Overlap geneDlgap1
Upstream geneLOC668720, LOC673535, LOC100043630, LOC623112, LOC623143
Downstream geneTgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik, Myom1, Lpin2, Emilin2, LOC100043644, Smchd1, LOC100043879, Ndc80
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120B08.T7 (MSMg01no120_b08.b1)MSMg01-120B08.TJ (MSMg01no120_b08.g1)
ACCAG330539AG330540
length710767
length of high quality
(start - end)
523 (46 - 568)385 (132 - 516)
definitionCHROMAT_FILE: MSMg01no120_b08.b1 PHD_FILE: MSMg01no120_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:25 2005CHROMAT_FILE: MSMg01no120_b08.g1 PHD_FILE: MSMg01no120_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCG
GAATTCCATGGGTTCCCTGTCTCCTTGGTGCTGAAGTCACAGGACATGGA
GGTGTCAAGCAGGCCCTGGCCAGAAAGCTTCATCCCTGAAGGCCAGTGTT
CATAAGTAACAGAGGTGCTATGCATGCTGGTGGGGGAAAGACATTAAAGG
TCTTACCCAGATGCGGATCCTCTGAACTCTAATAACCATCATGGCAAGAG
ACACTCACAGGAGCAATAGTGGCATAAATATTATAGGGAAAACCAACTTC
TTTTTGATTTCTTTTTTCACAGGAAGAAACACAGACCAGTTCTTGTGAAC
CTGGCAAAGACCCATGGCTTGGAGCTCATAGGTCCTAGTGTTAATTCTAG
TACTTTATTTTGCTAAACGGACATAGTATTAAACTCCTCTCTAAATTCAC
ATCTATATACCCGCAGAATGGTGATGTAGCTCTTATACTATCAGTTTGTA
CAATTTTTAAAAATTTCTTTGTCTGGTAAATGACAGTTAATGAAAAAAAA
TTCACCAGTGGTGAATTCCAGAGAATAACTGTGTGTGGGACTGTCAGGCA
TAAATGGGACTCTGATATAATTTTTTTTTGTCCACCCAAGGCTCAGGACC
ATTGCAGAACATGGGACAGAAATGTTCTAAGAGTCGGACTCAGGGAGGAC
CAGATCCAAN
NTTTTAANNNCAACCACCNCCCTCTAACCCCATCCTCCGGGCGCACAAAT
AATAANTNACGATGATGTGCGTAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACATTCTAAAAGGAAGAA
TAGGGTACCTAAGGAAAACTTGAAAGGTTCTGCTAAATCTAAGATACATA
TAGATGCTCCCTCACAGGCAAAATACTGCCAGGGCTTAAAGCACAGACAG
ACAACTTCCTGGGAATCAGCTAGGAAGGCCTATGGATACAGGAGGACCTG
TCTGTATGGGCTTTCAGAGTTGTCAAGAATTCTGCTTTTCCACTTAGAGA
GAGAATGAGAGCCAGAGACCCAAGATAGTTCAGGAACCACAGCTATCCAG
AGATAGCCCAGGAACCACAGCTGTCCACATGGTTTCTGAAGTAGATCTTG
GGGTGATGCATTTGATCTAACATCCCTAAGCCAGCATTTAGAGTGTCTGA
AGGCTCCTCTCTATTGCCAAGTGGAAGGGAATCCCAGCATATTTACTAGT
AGGTGATACTAGTGCATGGGGAAGTATGGTAAGGGTGAAAGCTCCGAAAC
TAGTTGTAGTAGAACAAAAGTGGGGGCCTACTGTAGACCTTATAGAAACT
TGAAAGAAGAAAGGAATTATGGAAAGACCCACTAATCGCTTAAACACACA
TGTACCGAGCACCTGCCCTGTGCCAATGTCCCCCCAGACGGGTACATCCA
ACTTTTCAACGGTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_b08.g1 MSMg01no120_b08.g1 CHROMAT_FILE:
MSMg01no120_b08.g1 PHD_FILE: MSMg01no120_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:25 2005
         (385 letters)



>mm_chr17_70848121_70848906
          Length = 786

 Score =  669 bits (346), Expect = 0.0
 Identities = 376/386 (97%), Gaps = 1/386 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacattctaaaaggaag-aatagggtacctaaggaaaacttgaaaggttctgctaaatct 59
           ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tacattctaaaaggaagaaatagggtacctaaggaaagcttgaaaggttctgctaaatct 260

                                                                       
Query: 60  aagatacatatagatgctccctcacaggcaaaatactgccagggcttaaagcacagacag 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagatacatatagatgctccctcacaggcaaaatactgccagggcttaaagcacagacag 320

                                                                       
Query: 120 acaacttcctgggaatcagctaggaaggcctatggatacaggaggacctgtctgtatggg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 acaacttcctgggaatcagctaggaaggcctatggatacaggaggacctgtatgtatggg 380

                                                                       
Query: 180 ctttcagagttgtcaagaattctgcttttccacttagagagagaatgagagccagagacc 239
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttcaaagttgtcaagaattctgcttttccacttagagagagaatgagagccagagacc 440

                                                                       
Query: 240 caagatagttcaggaaccacagctatccagagatagcccaggaaccacagctgtccacat 299
           |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagatagctcaggaactacagctatccagagatagcccaggaaccacagctgtccacat 500

                                                                       
Query: 300 ggtttctgaagtagatcttggggtgatgcatttgatctaacatccctaagccagcattta 359
           |||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtttctgcaggagatctttgggtgatgcatttgatctaacatccctaagccagcattta 560

                                     
Query: 360 gagtgtctgaaggctcctctctattg 385
           || |||||||||||||||||||||||
Sbjct: 561 gaatgtctgaaggctcctctctattg 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 786
Length adjustment: 9
Effective length of query: 376
Effective length of database: 777
Effective search space:   292152
Effective search space used:   292152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)