BAC Information

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BAC

Clone NameMSMg01-120G09
Chromosome17 (Build37)
Map Location 53,640,032 - 53,640,298
singlet/doubletsinglet
Overlap geneRab5a
Upstream geneKcnh8, LOC668506, EG629036, LOC668512, Efhb, LOC668513
Downstream gene4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1, LOC100043829, EG435531, Slc5a7, LOC668529, 1700025K24Rik, Trp53-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120G09.T7 (MSMg01no120_g09.b1)MSMg01-120G09.TJ (MSMg01no120_g09.g1)
ACCAG330777AG330778
length703700
length of high quality
(start - end)
268 (48 - 315)493 (75 - 567)
definitionCHROMAT_FILE: MSMg01no120_g09.b1 PHD_FILE: MSMg01no120_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:49 2005CHROMAT_FILE: MSMg01no120_g09.g1 PHD_FILE: MSMg01no120_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGG
AATTCATGAATTACATAAAATCGACATTAATGGGGCTAGCAATGGGGTTA
CTTCAGTGGAAGGTATAGACGGCGGCTTAGAAAATTGGAGGCCCTAAGTT
TAATTCATACTACTGGAAGAGGAAAAAAAAGTTAAGGAAAGGAGGAGGAA
GTGGAAGAAAGAAGGATGAAAGGAAGGAGGAAAGAGAAAGGAGGAGAATA
GAGGAGAAAGGAAGGAAGGAGACGGAGGATGCGGAGCAGGAGGAAGAAGA
AAAAAAAAGACAGCGTGTATCTCCTAACTTCCAATCAATCTCTTCTTTTT
TAACCTTCCCCAACTCTGAGGAAGGGTCTTTAGCTCAGGCTGGCCACTAC
ATCCTGCTTCACAACCAGACTTTGCAATATTCCTAAGAAGATATTGCTTA
GTGAAAAGGACCTAGAAAAATAGTACAATCAGGAAAAAAAAAGATTTAAG
AAGGGTGAGGAACATTCAGTATATATTGCTTTTCATTAGATATTAAGCTT
ACCTATTGCCATAAATATTTCATTTACATTCATTGATGTCTTAGCTGATG
TCTCCATAAATAATAAGCTGTTGTCATCTGCATAGGACTGTGCTTCCTGT
TTAAAATTAAAACCAACCCTTACGCATATACCGTATACTGTTTACTTTAT
AGG
NTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTAATTATTAGTTCTATTAGTATTT
TGGTGACATTTATAAATTTTCTGTATGCACGATCATGTCATCTGCTGAGA
TGTATAATTTTGGTTTCCTACTTTTCAATTTTGTTGAGTTTCCTTTTGCT
TTACCCTGATTGTTCTAGATCAGATATCCTGTATTATGTTGAATAGAAAT
AAATTTTGGTTTTAGTGGATAGATTTTTTTATCTTAAAGGAAATGCCAAA
ATCTTTTTCTTCAAAGATCTTATTATAATGGTGGATATACAACTTCATTC
ATGACCTAATTTCCTACGAGTTTTTATCATAAAGGGATGCTGAATTTTCT
CAAATAGTCTTTTTCACGCTATTGGAATGACCATGTGGTTGTAACATTGT
GCTACAGTGGTGTTCCATATTTCTTGTCTATATTAAACTACCATTGTATC
TCCGGAATGAATCCCACTTGATTACAGTGAATAATCTTTCTTAAAGATTT
GCTTTATTTTTGCTTATATGTCTGTGTTCATGTGTGAGCGTGTGTGTGCG
CGTGCGTGCGTGTGCGTGTGTGTGTACCCTTTCTCCTTTACCTTTCTTTT
TCCTCCTCAATAAATCCACTTTCCTATCTATATTCTATTCACCCTTTTCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_g09.b1 MSMg01no120_g09.b1 CHROMAT_FILE:
MSMg01no120_g09.b1 PHD_FILE: MSMg01no120_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:49 2005
         (268 letters)



>mm_chr17_53639962_53640630
          Length = 669

 Score =  493 bits (255), Expect = e-144
 Identities = 264/269 (98%), Gaps = 5/269 (1%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattcatgaat---tacataaaatcgacattaatggggctagcaatggggttacttcag 59
           ||||||||||||   |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gaattcatgaatgagt--ataaaatcgacattaatggggctagcaatggggttacttcag 280

                                                                       
Query: 60  tggaaggtatagacggcggcttagaaaattggaggccctaagtttaattcatactactgg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tggaaggtatagacggcggcttagaaaattggaggccctaagtttaattcatactactgg 220

                                                                       
Query: 120 aagaggaaaaaaaagttaaggaaaggaggaggaagtggaagaaagaaggatgaaaggaag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 aagaggaaaaaaaagttaaggaaaggaggaggaagtggaagaaagaaggatgaaaggaag 160

                                                                       
Query: 180 gaggaaagagaaaggaggagaatagaggagaaaggaaggaaggagacggaggatgcggag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 gaggaaagagaaaggaggagaatagaggagaaaggaaggaaggagacggaggatgcggag 100

                                        
Query: 240 caggaggaagaagaaaaaaaaagacagcg 268
           |||||||||||||||||||||||||||||
Sbjct: 99  caggaggaagaagaaaaaaaaagacagcg 71


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 669
Length adjustment: 9
Effective length of query: 259
Effective length of database: 660
Effective search space:   170940
Effective search space used:   170940
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)