BAC Information

Click to search

BAC

Clone NameMSMg01-120G10
Chromosome17 (Build37)
Map Location 54,833,889 - 54,834,504
singlet/doubletsinglet
Overlap genenone
Upstream geneEG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1, LOC100043829, EG435531, Slc5a7, LOC668529, 1700025K24Rik, Trp53-ps, LOC240117
Downstream geneEG629178, LOC100043833, LOC100043485, LOC677496, St6gal2, LOC383258, Pot1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120G10.T7 (MSMg01no120_g10.b1)MSMg01-120G10.TJ (MSMg01no120_g10.g1)
ACCAG330779AG330780
length719719
length of high quality
(start - end)
620 (45 - 664)602 (70 - 671)
definitionCHROMAT_FILE: MSMg01no120_g10.b1 PHD_FILE: MSMg01no120_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:49 2005CHROMAT_FILE: MSMg01no120_g10.g1 PHD_FILE: MSMg01no120_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGGGAAGTTCCGATTTATAGTTATTCCCAGAGGTTTCCTCACTGGC
TACAATGGCGAAACTTTTTTTCCCTTTCATTACCTAAGTCTGCACTCACA
ACCCATCACCACTGCTCTCAGCATTCTCTCACTGCATTACATAGCAGAAA
GGCACCTAATATGCTCTGTAAAAGCCTGCCTTCTGAAGGCTGGATTGTGC
AATTAGACACAATCTGGAAATGCTACAACTGGAGCAATAAGGCTGGGTCC
AAGAGAGTCTGAGTACCACTAAAAGTTCTCTACTGGCTTCTTAGGGGTAC
ATGATTGACTGTGAGGATTGTTCAGAGGTCAGCAGGAGTTCACACAGCAG
TGAATGTTTATGATTGACGGCATCCAAGCTGACCTCAGTGGGAAGACCTG
GACTTACAAATCTTACAAATTAAAATTCCTTCCCAATATCAATCTACATC
TGCCAAACTTCCTTAATTCTCCAAAGTTTGGTACATGGACAGTTTTCATC
GGAAGCAGCTGGTAACTGCGAATCTCCAAATGGTTCAACAACAGAAGACA
CTGGTTAAAGTAACCATGTTTCACTGTGCTAAACAGTACTGGTAGGACAG
TGTGCCACCATAGCAACTGTGCTTGGTGCCATTTACAAGACAGCTGAGTG
AAGATTTTATAAGATTTTG
NCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXGTAATGACTCCAACTTATTGATAGTGTTTTA
TGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAG
AACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAG
GTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCT
TTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATC
ACCACGTCAAAGGGTGACAGCATGCTCATAAGACGCCCCAGCGTCGCCAT
AGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACTGTCAT
ACGCGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCAC
TGTTCGTCCATTTCCGCGCAGACGATGACGTCACTGCCCGGCTGTATGCG
CGAGGTTACCGACTGCGGCCTGAGTTTTTTAAGTGACGTAAAATCGTGTT
GAGGCCAACGCCCATAATGCGGGCTGTTGCCCGGCATCCAACGCCATTCA
TGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAA
GTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTG
ATGTCCGGCGGTGCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_g10.b1 MSMg01no120_g10.b1 CHROMAT_FILE:
MSMg01no120_g10.b1 PHD_FILE: MSMg01no120_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:49 2005
         (620 letters)



>mm_chr17_54833685_54834704
          Length = 1020

 Score = 1114 bits (576), Expect = 0.0
 Identities = 606/616 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagggaagttccgatttatagttattcccagaggtttcctcactggctacaatgg 64
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagggaagtactgatttatagttattcccagaggtttcctcactggctacaatgg 264

                                                                       
Query: 65  cgaaactttttttccctttcattacctaagtctgcactcacaacccatcaccactgctct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cgaaactttttttccctttcattacctaagtctgcactcacaacccatcaccactgctct 324

                                                                       
Query: 125 cagcattctctcactgcattacatagcagaaaggcacctaatatgctctgtaaaagcctg 184
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagcattctctcactgcattacacagcagaaaggcacctaatatgctctgtaaaagcctg 384

                                                                       
Query: 185 ccttctgaaggctggattgtgcaattagacacaatctggaaatgctacaactggagcaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccttctgaaggctggattgtgcaattagacacaatctggaaatgctacaactggagcaat 444

                                                                       
Query: 245 aaggctgggtccaagagagtctgagtaccactaaaagttctctactggcttcttaggggt 304
           || |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 445 aaagctgggtccaagagagtctgagtaccactaaaagttctctactggcttcttaagtgt 504

                                                                       
Query: 305 acatgattgactgtgaggattgttcagaggtcagcaggagttcacacagcagtgaatgtt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 505 acatgattgactgtgaggattgttcagaggtcagcaggagttcacacagcaatgaatgtt 564

                                                                       
Query: 365 tatgattgacggcatccaagctgacctcagtgggaagacctggacttacaaatcttacaa 424
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tatgattgaaggcatccaagctgacctcagtgggaagacctggacttacaaatcttacaa 624

                                                                       
Query: 425 attaaaattccttcccaatatcaatctacatctgccaaacttccttaattctccaaagtt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 attaaaattccttcccaatatcaatctacatctgccaaacttccttaattctccaaagtt 684

                                                                       
Query: 485 tggtacatggacagttttcatcggaagcagctggtaactgcgaatctccaaatggttcaa 544
           |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 685 tggtacatggacagttttcatcggaagcagctggtaactgtgaatctcctaatggttcaa 744

                                                                       
Query: 545 caacagaagacactggttaaagtaaccatgtttcactgtgctaaacagtactggtaggac 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 caacagaagacactggttaaagtaaccatgtttcactgtgctaaacagtactggtaggac 804

                           
Query: 605 agtgtgccaccatagc 620
           ||||||||||||||||
Sbjct: 805 agtgtgccaccatagc 820


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)