BAC Information

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BAC

Clone NameMSMg01-120G20
Chromosome17 (Build37)
Map Location 75,353,220 - 75,353,423
singlet/doubletsinglet
Overlap genenone
Upstream geneSrd5a2, Memo1, EG668716, 2810410M20Rik, LOC668773, LOC668775, Spast, Slc30a6, Nlrc4, LOC100043883, LOC624159, Yipf4, Birc6, Ttc27
Downstream geneLOC100043672, Ltbp1, EG621988, Rasgrp3, 2810405J04Rik, LOC668787, LOC100043885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120G20.T7 (MSMg01no120_g20.b1)MSMg01-120G20.TJ (MSMg01no120_g20.g1)
ACCAG330798AG330799
length768718
length of high quality
(start - end)
204 (128 - 331)---
definitionCHROMAT_FILE: MSMg01no120_g20.b1 PHD_FILE: MSMg01no120_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:51 2005CHROMAT_FILE: MSMg01no120_g20.g1 PHD_FILE: MSMg01no120_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAAAAAAAAATGAAGGGAATAAGAAAATGTCAACAAAACCGCGGATGGC
GAACGCCTAATAATTGCGGCCGCTAAACGACTCCTATTCCCAAAAAGCCG
CGGAATTCTTTTTTTTTCAAAAATGGTTAAATGCTGATGCTATAATTTGT
CTGTCTGTCTGTCTGCCTGTATGTCATATATCTGCTTTTAAACAATTTTG
CCATACAGCCATGCTTGACTGGTATTCAAAATGTAGCCTAGGCCTCTGAA
TTTCAACAGTCCCCTTTCTTAAAGTGTAAGTTCCAGAGTCAAAAGACATG
ACAACTAATAGCTCTAATGTACAAAGACAGAGAAGATAGACATTACAGCT
CAAGAAGAAAGGAAATTCACTCTTTATCTTCCTTTCCCTATCTTTGGATC
CTCAATGTATTAAATGACTTCTTTCTACATCAAAAAGAGAGAAGTTTCTT
TACTTAGACTGCTCTATGAAAAACTAATCTCTTCTAGAACCCTCACAGTC
GCACCCCTAAGTAATATTTTGCCATCTATGTAAACATCCTTTGTCCTAAT
CTAGTTGACCTAACATCATTACTTTCAAGGCTGAACAAAAAGAAGGACAT
TTCATGTGTGACCCACAGGTCTCTCGTCATCAGAAATAAGAAAGACTTCA
TCCAGCAACTGATATGAGCAAATGCACAAACCTACAGTGAAACATTGCAA
CAAATTTTTGTAAAAACCGTAAAGGAAATGGTGGGCCCTATCTGTAAATA
ACCCATAGTATTCTGGTT
CAGTGCTAATGGTAAGACTGGAGGACGACTGTTTCTCAAATGGAAGTAGA
GGGTAAAAGGTTCCGCGTGAATTCGTGAAATCAACATTTTCTATTCGGGG
GGGCTCCTAATTGCACTAAGGGTTCTTGAGGAGTTGGGACCAATTGGTTT
GCGAGGGTTAGAAACAATAGATATGGGGTGGAGAGAAGGCTGAAACATGA
AAAGCGGTGGGTGATCGTGGGAAAGGGATGAGTGCTGGGCACAGGTGTGA
CGTGATGGGTCTTTGTCATTTGTAATGAGAGCTGATGGCCTCTTCTAACA
AGGGTGAAGACAGGTGGCATGTTTTTTTATATAATCAAGGGGGAAATCTG
GGGGGGGGGGGGAAAGAGACTCCCATCTGGGGGGACGCCGGGTGTGGGGG
GGGGGGGGTTTGATTCTAGCCCTTGAGAGTGAGAGGCATGGGGATCTCTG
TGGGGGAGTTTGGGGGGGGCCTGGGTTGCGTGACACAACGGGCACGGGTT
GATTTAACCGTGTTATGTTCTAGGGTGGGTGTTGCCATATAATATGCTGT
GCTACGGCTGAGGGGATTATCGGTGTGTGCTTAATACGATGGGGGGGGGG
GGGGGATACCTCTTTCAGTGGGGGGGGGGGGGGGGGGGGACAACAGGGGG
GGGGGTTAAACAAAATATTGATCTGGCGATAGTAACGGGGTGGAGGCGGG
GATAATAAGAGGGGGAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_g20.b1 MSMg01no120_g20.b1 CHROMAT_FILE:
MSMg01no120_g20.b1 PHD_FILE: MSMg01no120_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:51 2005
         (204 letters)



>mm_chr17_75352972_75353575
          Length = 604

 Score =  371 bits (192), Expect = e-107
 Identities = 201/204 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaatgctgatgctataatttgtctgtctgtctgtctgcctgtatgtcatatatctgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 taaatgctgatgctataatttgtctgtctgtctgtctgcctgtatgtcatatatctgctt 393

                                                                       
Query: 61  ttaaacaattttgccatacagccatgcttgactggtattcaaaatgtagcctaggcctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ttaaacaattttgccatacagccatgcttgactggtattcaaaatgtagcctaggcctct 333

                                                                       
Query: 121 gaatttcaacagtcccctttcttaaagtgtaagttccagagtcaaaagacatgacaacta 180
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 332 gaatttcagcagtcccctttcttaaagtgtaagttccagagtcaaaagacatgagaacta 273

                                   
Query: 181 atagctctaatgtacaaagacaga 204
           | ||||||||||||||||||||||
Sbjct: 272 agagctctaatgtacaaagacaga 249


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)