Query= MSMg01no120_j17.b1 MSMg01no120_j17.b1 CHROMAT_FILE:
MSMg01no120_j17.b1 PHD_FILE: MSMg01no120_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:06 2005
(636 letters)
>mm_chr17_12189590_12190625
Length = 1036
Score = 944 bits (488), Expect = 0.0
Identities = 617/716 (86%), Gaps = 88/716 (12%)
Strand = Plus / Plus
Query: 9 gaattcattttacttaggctttattaaatagtgcaagggttttttgacctcttctgaggc 68
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaattcattagatttaggctttattaaatagtgcaagggttttttgacctcttctgaggc 180
Query: 69 actcaggataagtttatcacctcagttaagaggaagttagacacagtctcctgggcttgg 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 actcaggataagtttatcacctcagttaagaggaagttagacacagtctcctgggcttgg 240
Query: 129 atatgtgctagaggtaacattgactcctgtatccaggttatgtttctgcatttctctatc 188
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 241 atatgtgctagaggtaacattgactcctgtatccaggttatgtttctgcattcctctatc 300
Query: 189 cattggttcatagcattggatctttgggttctcttgttcattgtcaaatcaaaggacaca 248
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccttggttcatagcattggatctgtgggttctcttgttcattgtcaaatcaaaggacaca 360
Query: 249 atcatgcttttgagagcagtgacctttgcctgcactggatcccctggaatgg-agttaca 307
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 361 atcatgcttttgagagcagtgacctttgcctgcactggatcccctggaacgggagttaca 420
Query: 308 gatagtt----------------------------------------------------- 314
|||||||
Sbjct: 421 gatagttgtgagctgtcacgcagacgctgggaactgaaccagggtcttctgcaagagcaa 480
Query: 315 ------------------------------aaattgttgtggttttatggtcactgtttt 344
||||||||||||||||||||||||||||||
Sbjct: 481 caagttctcttaattgaatacagaaagtttaaattgttgtggttttatggtcactgtttt 540
Query: 345 acaaaagacagggcgtaagatgacttataatttttctgagacatgtcagccagggctcca 404
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 acaaaagacagggcataagatgacttataatttttctgagacatgtcagccagggctcca 600
Query: 405 gcagcgaagcagagccaccaggatgattacacacacacacacacacacacacacacacac 464
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gcagcaaagcagagccaccaggatgattacacacacacacacacacacacacacacacac 660
Query: 465 acacacac--ac--actcactcactcacacacgtgagagagataacacctaaataaacaa 520
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 acacacactcactcactcactcactcacacacgtgagagagataacacctaaataaacaa 720
Query: 521 acacacatatgtatggattatgattatagccacacacatgtatgtgttggttatacctat 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 acacacatatgtatggattatgattatagccacacacatgtatgtgttggttatacctat 780
Query: 581 ccctatatgcacacatatacagctataaagatgcaaattacttatttatattaaga 636
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ccctatatgcacacgtacacagctataaagatgcaaattacttatttatattaaga 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_j17.g1 MSMg01no120_j17.g1 CHROMAT_FILE:
MSMg01no120_j17.g1 PHD_FILE: MSMg01no120_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:06 2005
(235 letters)
>mm_chr17_12356675_12357309
Length = 635
Score = 455 bits (235), Expect = e-132
Identities = 235/235 (100%)
Strand = Plus / Minus
Query: 1 atcttttggggagccctcttcaggtacctactgaggtgcagagaacgctgccagggagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 atcttttggggagccctcttcaggtacctactgaggtgcagagaacgctgccagggagga 376
Query: 61 ctactcccatagagcatccttcaacacaggaacgcagctctgataactcccagccatctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ctactcccatagagcatccttcaacacaggaacgcagctctgataactcccagccatctg 316
Query: 121 cctggggctctccagcatctgcctcttcccacactcctccaccgtcccacaccccgacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cctggggctctccagcatctgcctcttcccacactcctccaccgtcccacaccccgacac 256
Query: 181 cctcacaattcctctgtacacattcctggttgtcagggctccctgaaaagcatga 235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 cctcacaattcctctgtacacattcctggttgtcagggctccctgaaaagcatga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space: 141476
Effective search space used: 141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
