BAC Information

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BAC

Clone NameMSMg01-120M01
Chromosome17 (Build37)
Map Location 56,479,344 - 56,616,688
singlet/doubletdoublet
Overlap geneJmjd2b, Ptprs, EG668592
Upstream geneLOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1
Downstream geneZnrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120M01.T7 (MSMg01no120_m01.b1)MSMg01-120M01.TJ (MSMg01no120_m01.g1)
ACCAG331041AG331042
length706703
length of high quality
(start - end)
534 (74 - 607)244 (77 - 320)
definitionCHROMAT_FILE: MSMg01no120_m01.b1 PHD_FILE: MSMg01no120_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:18 2005CHROMAT_FILE: MSMg01no120_m01.g1 PHD_FILE: MSMg01no120_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,479,344 - 56,479,877)(56,616,445 - 56,616,688)
sequence
NAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGC
GCGGAATTCTGTCTGCCTGCCCCTCAGTGCTGGGATTAAGGATGTGCGCC
AACATGCCGGACAGTTTTAAATTTTGATTTTTTCTGTTTTTCGAGACAGA
GTCTGGCTTTGTAGTCCCAGATAGCCTTAAACTCCTAAGTCCCCTGCTTT
CGCCCACGAGAACAAGGATGACAGGCATGTGCCATCTTTAGCTATGTCTC
GGTCCTCTTATATTCCACTGTCTATTTCTGTGACAAAGTCCTGGGGGACT
AGTACGATTGACTTCCAAGAGGAAAAGTGGTTCTAGGCTGGTAAGAGGGC
TTAGTGGGTAAGGAGCTTGCGGCCATGCCAGGCCACATGGTGACACGTTG
TCCTCTGACTGCCACACCCGGGTCATGGCATGTGCACTCACATACAAGAT
GAACAAATGAAAATGTAATCAAAATAATTGAAAATGTCCTCCTCACAGCA
GCTGGCCACTAAGATGTTTGTCCATGGTATGCTGGTCACCTGTCCCCTCA
GGCCTATGGACCACTCTTCTGTGGCTGTGCAGATCCCATTGTTCCCAGGT
GGCAGGGGATTATTAGAGGTTAGACTACAATAGTAACAGCAGAGTTGAAG
GGGTAGGGCTGTGGACAGGTTGTTCCTCTGGAAAGTGGTGGGTGTACCGG
TGGGGC
NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTCTGAAATTCCAGAGGGGAAAAAAACCCAGACTGT
AAAACAAAATCGTTTCGTTATTTGAGGCAGGGTCTCAGGTGCAGTCCACA
CTCGACTCACACTTGCAGCAATCCTCCTGCTGCTGTCTAAAAGTTTCGCA
CCCCATGCCCGTGACTACTCTTTTCTTTAAGGTGTTTTTCAGTCTTTTGC
TGCATTTCATCTGTTTGGCATGTCTAGTAACTCAGTGGACATGGGTGTGT
GCATACATGTGGAGGTCAGCGCCATATGAGTCAGATTCCTCCTTCCACTA
TGGGACTTTGGGGATTGAAGTCAGGTTCTCTGGCTTGGGCTGCAAACACC
TCTATTTGCCGAGCCATTTTGAGCCCCACCCCCACTTTTTAAAAAATTTT
TTTAATGCCCAGCTCATCCTCCTTTTCCCAAGCTGGTCTCGAATTCATTG
TTATCCCAGGCTGTTCAAAAACGACGTCCTCCTGCTTCAGCCTCTTCAGC
CAGCAAGGCGTTCTTGATGTCAAAGATTTTAGGGAAAGGATATTTTGGTC
AAAGAAAGCATAGTGGGCAGATAGGCAGGAGGCTTCAGCCATCCTCCGCG
TACCTTGAGCCCAACATGGCCTATTACTGAACTTGAATCTATACGAATCC
CCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_m01.b1 MSMg01no120_m01.b1 CHROMAT_FILE:
MSMg01no120_m01.b1 PHD_FILE: MSMg01no120_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:18 2005
         (534 letters)



>mm_chr17_56479144_56480077
          Length = 934

 Score = 1025 bits (530), Expect = 0.0
 Identities = 533/534 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagtgctgggattaaggatgtgcgccaacatgccggacagttttaaattttgatttttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagtgctgggattaaggatgtgcgccaacatgccggacagttttaaattttgatttttt 260

                                                                       
Query: 61  ctgtttttcgagacagagtctggctttgtagtcccagatagccttaaactcctaagtccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtttttcgagacagagtctggctttgtagtcccagatagccttaaactcctaagtccc 320

                                                                       
Query: 121 ctgctttcgcccacgagaacaaggatgacaggcatgtgccatctttagctatgtctcggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgctttcgcccacgagaacaaggatgacaggcatgtgccatctttagctatgtctcggt 380

                                                                       
Query: 181 cctcttatattccactgtctatttctgtgacaaagtcctgggggactagtacgattgact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctcttatattccactgtctatttctgtgacaaagtcctgggggactagtacgattgact 440

                                                                       
Query: 241 tccaagaggaaaagtggttctaggctggtaagagggcttagtgggtaaggagcttgcggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccaagaggaaaagtggttctaggctggtaagagggcttagtgggtaaggagcttgcggc 500

                                                                       
Query: 301 catgccaggccacatggtgacacgttgtcctctgactgccacacccgggtcatggcatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgccaggccacatggtgacacgttgtcctctgactgccacacccgggtcatggcatgt 560

                                                                       
Query: 361 gcactcacatacaagatgaacaaatgaaaatgtaatcaaaataattgaaaatgtcctcct 420
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 gcactcacatacaagatgaacaaatgaaaatgtaatcaaagtaattgaaaatgtcctcct 620

                                                                       
Query: 421 cacagcagctggccactaagatgtttgtccatggtatgctggtcacctgtcccctcaggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacagcagctggccactaagatgtttgtccatggtatgctggtcacctgtcccctcaggc 680

                                                                 
Query: 481 ctatggaccactcttctgtggctgtgcagatcccattgttcccaggtggcaggg 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctatggaccactcttctgtggctgtgcagatcccattgttcccaggtggcaggg 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no120_m01.g1 MSMg01no120_m01.g1 CHROMAT_FILE:
MSMg01no120_m01.g1 PHD_FILE: MSMg01no120_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:18 2005
         (244 letters)



>mm_chr17_56616141_56616784
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggggaaaaaaacccagactgtaaaacaaaatcgtttcgttatttgaggcagggtctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 agaggggaaaaaaacccagactgtaaaacaaaatcgtttcgttatttgaggcagggtctc 489

                                                                       
Query: 61  aggtgcagtccacactcgactcacacttgcagcaatcctcctgctgctgtctaaaagttt 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 488 aggtgcagtccacactcgactcacacttgcagcaattctcctgctgctgtctaaaagttt 429

                                                                       
Query: 121 cgcaccccatgcccgtgactactcttttctttaaggtgtttttcagtcttttgctgcatt 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cgcaccccatgcctgtgactactcttttctttaaggtgtttttcagtcttttgctgcatt 369

                                                                       
Query: 181 tcatctgtttggcatgtctagtaactcagtggacatgggtgtgtgcatacatgtggaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tcatctgtttggcatgtctagtaactcagtggacatgggtgtgtgcatacatgtggaggt 309

               
Query: 241 cagc 244
           ||||
Sbjct: 308 cagc 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)