BAC Information

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BAC

Clone NameMSMg01-121D20
Chromosome17 (Build37)
Map Location 79,263,024 - 79,263,329
singlet/doubletsinglet
Overlap geneEif2ak2
Upstream geneLOC668795, LOC383275, Crim1, Fez2, LOC100043888, Hdac1-ps, Vit, Strn, Heatr5b, 2310002B06Rik, EG625054
Downstream gene2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121D20.T7 (MSMg01no121_d20.b1)MSMg01-121D20.TJ (MSMg01no121_d20.g1)
ACCAG331402AG331403
length717720
length of high quality
(start - end)
311 (47 - 357)513 (71 - 583)
definitionCHROMAT_FILE: MSMg01no121_d20.b1 PHD_FILE: MSMg01no121_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:57 2005CHROMAT_FILE: MSMg01no121_d20.g1 PHD_FILE: MSMg01no121_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGTGATACAGGAACTTTGGAGCAATGGATGAGAAACAGAAATCA
GAGTAAAGTGGACAAAGCTTTGATTTTGGACTTATATGAACAAATCGTGA
CCGGAGTGGAGTATATACACTCGAAAGGGTTAATTCACAGAGATCTTAAG
GTAAGTAGGAAATCCACCTTGTTGGTTGATAAACACACAGTTTAATAACT
TTAAAAATGTATCTTCTTTAGTTTTAGATTTGTGATTGGCAGTTAGTCAC
GATAAAATTACATCTCTCTTATCTGCTGGACCTAAAGTGGGTCTGGAATT
TACCCTTTTGTTTTCCCCCGNAACTGAACGCCATTTCTCCGAGGCCCATG
AACTTATTGTGACCATGATCCTATTATAAATCTCGGTCCTGTGGGGCCAT
GTTTAGTTTGATGGTCATTACCTCATTAAAAGCAAAAACACTCTTCATAG
TCTGAGAAATTATTGTGGCTGCCATGTTCCAGTTGGCTGCCCTGACCCAG
CCGCTTGCTCTGTTCTACTGTGTTTTTGCGGCTGTATCCGAGGGCAGGCA
TAGAATAACGCATGGCTTATTGTTGCCTTGATTTGTCATTTTCTGGTCTC
GCCTTTATTTATTATTTCCATGCCTTTCCTATTGCATATTGTGTTTGCTT
TTCACGAACCACCACGN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCAGAGAAG
CACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGAGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACGCTC
CTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGT
CTGGCGGTTCCTCAGAAAATTGTACATAGTACTACCGGAGGATCCAGCAA
TACCTCTCCTGGGCATATATCCACAACATGCCCCAACTGGTAAGAAGGAC
ACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG
GAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT
ACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGACGT
AACACATTCCCAAAGGAACTCACACAATATGTACTCACTGATAAGTGGAT
ATTAGCCCCCAACCTAGGATACCCAAGATATAAGATACAATTTGCTAAAC
CCATGAAACTCCACAAGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_d20.b1 MSMg01no121_d20.b1 CHROMAT_FILE:
MSMg01no121_d20.b1 PHD_FILE: MSMg01no121_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:57 2005
         (311 letters)



>mm_chr17_79262821_79263531
          Length = 711

 Score =  576 bits (298), Expect = e-169
 Identities = 304/306 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtgatacaggaactttggagcaatggatgagaaacagaaatcagagtaaagt 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggaattctgtgataaaggaactttggagcaatggatgagaaacagaaatcagagtaaagt 450

                                                                       
Query: 64  ggacaaagctttgattttggacttatatgaacaaatcgtgaccggagtggagtatataca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ggacaaagctttgattttggacttatatgaacaaatcgtgaccggagtggagtatataca 390

                                                                       
Query: 124 ctcgaaagggttaattcacagagatcttaaggtaagtaggaaatccaccttgttggttga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ctcgaaagggttaattcacagagatcttaaggtaagtaggaaatccaccttgttggttga 330

                                                                       
Query: 184 taaacacacagtttaataactttaaaaatgtatcttctttagttttagatttgtgattgg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 taaacacacagtttaataactttaaaaatgtatcttctttagttttagatttgtgattgg 270

                                                                       
Query: 244 cagttagtcacgataaaattacatctctcttatctgctggacctaaagtgggtctggaat 303
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 269 cagttagtcacgataaaattacatctctctaatctgctggacctaaagtgggtctggaat 210

                 
Query: 304 ttaccc 309
           ||||||
Sbjct: 209 ttaccc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)