BAC Information

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BAC

Clone NameMSMg01-121E12
Chromosome17 (Build37)
Map Location 56,260,241 - 56,260,469
singlet/doubletsinglet
Overlap geneLrg1
Upstream geneLOC100043833, LOC100043485, LOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik
Downstream geneSema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121E12.T7 (MSMg01no121_e12.b1)MSMg01-121E12.TJ (MSMg01no121_e12.g1)
ACCAG331433AG331434
length784705
length of high quality
(start - end)
236 (126 - 361)229 (120 - 348)
definitionCHROMAT_FILE: MSMg01no121_e12.b1 PHD_FILE: MSMg01no121_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:00 2005CHROMAT_FILE: MSMg01no121_e12.g1 PHD_FILE: MSMg01no121_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCTTTTTTCTNTTTTTTTTTTTTTTTCCTCCCCCATACNNNAAGAGGN
GGGGAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCC
GCGGAATTCACTTTGTACCCCAAACTAGCCTCGAGCTCAGAATCCACCTG
CCTCTGCCTCCCAAGTGCTGGTATCCAAGGCGTGTGCCACCACGCCCGGC
TCTTCCTCCTCTTTCTCCTCCTCCTTCTTCAAGGTTTCCTATATAGTCTT
GGAACTCACCATGTATATCAAGCTGGTTTCAAACTCACCTGCCTCTGCCT
CCCAAGTGTTGGGATTAATGGCATATGCCATCATATCTGGTTAAGATACT
ATTAAAAAATAGATTGCATCACTTTTTTTGCCTCAGTGGTTAATAGTGGT
TGCTGCAAATTATTTTTTTTACCCCCCCCCCCCCCCAATTAATGTGTGTA
GTCTTCTGAACCCTTCCACCTGCCCAACAAAAAAAAATATTTGGTAGGCG
GGGTGGTCTCAAAACTTTAAACGATATACTGGCTGTATACCGTTCTACTT
CTTTGAACCATTTCCGTTTTTTTTCCCGCCATCCAGTTTTTAACTTTAAG
CCCTTGAGAGATCACCAGCGATTCTATCAACTTTTGTTTGCTGTAGTACC
GAAAGGTCATGATTTATTACACATTACGCCTTCACCTTATTTTTCTCAAC
CCCCACACCGCTTCTTTTTTTTCCACCCCCCTTTCGGTTATATATTACCA
CCCATGGTTTATATTTATAAATAATAACCACCCN
TCATTCTCTGTTAGCCTGGCGGCGCCTGTTCACAAATTTAGGTGACCTAT
AGAATTTCTAAAAAAATCCACCGACAGATGGACAGTGTCGGCAGGGAGGG
AGCTCGGAAACTCCCCGGGACCATGGCAGGAGACGGTGCTACCCTCAGCC
GACTGCAGTATCAGGCATTCCTTGAGGCTGGACACCCTGCCCAAGAGGGC
CAGGAGAAACAGGGTTCTGGCAAGGCAGGTCTTGAGATCCTGGAGGCTGA
GGTTAGTGAACCATGGTGAAAAATATCTCCCCTTCTTCCCGTCCCTGTGG
CCACCACCCTTTTTTGTACCCACTGAGTCCTTCCTCACCAGGACTGGAAT
TTTATTGATCCTCCCCGCCCCCGCTTCCTGAGACTATTTTTGTCTCCTTA
GTATGCTGTGCGCCAGACAGAATCAGAGAACTCCTATGTATTCGGCACAG
CCCCAGTAATTCCTATACCCTGAGTTTCACTCTCACAATGCAGCCTCTGA
TCCTCCGCAAAACTTCCCTCACTGACTCTTAAACCTCCTGTTTCTGACCC
CCCTATATAACTCTACTCCTGCTATAACCTCTTAAATTCAACCAGCATAA
TAGAGCATCCCCCGCTTATGTTTTTTATCTTTTTCTACCCTGCTCTGTTT
CCCGGGTCCTTACCTTATTTCAACAACTAGCTTGCTCCGAAGTCCATACT
TATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_e12.g1 MSMg01no121_e12.g1 CHROMAT_FILE:
MSMg01no121_e12.g1 PHD_FILE: MSMg01no121_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:00 2005
         (229 letters)



>mm_chr17_56260041_56260669
          Length = 629

 Score =  404 bits (209), Expect = e-117
 Identities = 224/233 (96%), Gaps = 8/233 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   accatggcaggagacggtgctaccctcagccgactgcagtatcaggcattccttgaggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accatggcaggagacggtgctaccctcagccgactgcagtatcaggcattccttgaggct 260

                                                                       
Query: 61  ggacaccctgcccaagagggccaggagaaacagggttctggcaaggcaggtcttgagatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggacaccctgcccaagagggccaggagaaacagggttctggcaaggcaggtcttgagatc 320

                                                                       
Query: 121 ctggaggctgaggttagtgaaccatggtgaaaaatatctccccttcttcccgtccctgtg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ctggaggctgaggttagtgaaccatggtgaaaaatatctccccttcttcccgtccccgtg 380

                                                                
Query: 181 gccaccaccct----tttttgtacccactgagtccttcctcaccaggactgga 229
           |||||||||||    |    |||||||||||||||||||||||||||||||||
Sbjct: 381 gccaccaccctaaact----gtacccactgagtccttcctcaccaggactgga 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)