Query= MSMg01no121_j05.b1 MSMg01no121_j05.b1 CHROMAT_FILE:
MSMg01no121_j05.b1 PHD_FILE: MSMg01no121_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:24 2005
(298 letters)
>mm_chr17_72226157_72226856
Length = 700
Score = 557 bits (288), Expect = e-163
Identities = 297/300 (99%), Gaps = 2/300 (0%)
Strand = Plus / Plus
Query: 1 ggagagaagggtcaaaattggcttgtttgtctgaaggactcttcca-cactttataaaat 59
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 ggagagaagggtcaaaattggcttgtttgtctgaaggactcttccaacactttataaaat 260
Query: 60 aagccctgttccctctggcttttgattaaaggtggggctgtctttaatagacacacccac 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagccctgttccctctggcttttgattaaaggtggggctgtctttaatagacacacccac 320
Query: 120 cacttcctctcacctctttgctttctgca-tgagaatattctgttttactttttctgtct 178
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 cacttcctctcacctctttgctttctgcactgagaatattctgttttactttttctgtct 380
Query: 179 gtgttttgacatcaaataagacattttcctctttgggaaattgtcttttgatttccctgc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgttttgacatcaaataagacattttcctctttgggaaattgtcttttgatttccctgc 440
Query: 239 tatttgttttaaaggacgtttgagacacagtctattaggttccagaaataatattttctg 298
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 tatttgttttaaaggacgtttgagacaccgtctattaggttccagaaataatattttctg 500
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 700
Length adjustment: 9
Effective length of query: 289
Effective length of database: 691
Effective search space: 199699
Effective search space used: 199699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no121_j05.g1 MSMg01no121_j05.g1 CHROMAT_FILE:
MSMg01no121_j05.g1 PHD_FILE: MSMg01no121_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:24 2005
(287 letters)
>mm_chr17_72293157_72293843
Length = 687
Score = 534 bits (276), Expect = e-156
Identities = 282/284 (99%)
Strand = Plus / Minus
Query: 1 ctggtccgtgcacttgtttcgcaccctctgaattaacatgtcattctccatttaggtgtg 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 484 ctggtccgtgcacttgtttcgcaccctctgaattaacatgtcattcttcatttaggtgtg 425
Query: 61 tctcccttccctgggagctatcgtggccatgcaccaggaaaagaggtggtgtggaactaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tctcccttccctgggagctatcgtggccatgcaccaggaaaagaggtggtgtggaactaa 365
Query: 121 tgtgtgattcatgattctcatcgctgaaaccaacaagtttcttttagtggaagtggcttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tgtgtgattcatgattctcatcgctgaaaccaacaagtttcttttagtggaagtggcttt 305
Query: 181 tcacgctggggagccagtcaacattcccaagtggtggccaaactctaatgaccagggtca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tcacgctggggagccagtcaacattcccaagtggtggccaaactctaatgaccagggtca 245
Query: 241 gcttagtggtcagggaaggggacctgttggcagtaattgcataa 284
||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 244 gcttagtggccagggaaggggacctgttggcagtaattgcataa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
