BAC Information

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BAC

Clone NameMSMg01-121P07
Chromosome17 (Build37)
Map Location 45,538,740 - 45,539,015
singlet/doubletsinglet
Overlap geneCdc5l
Upstream geneRunx2, Supt3h, 4930564C03Rik, EG210562, EG668314
Downstream geneSpats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121P07.T7 (MSMg01no121_p07.b1)MSMg01-121P07.TJ (MSMg01no121_p07.g1)
ACCAG331939AG331940
length789702
length of high quality
(start - end)
80 (67 - 146)284 (67 - 350)
definitionCHROMAT_FILE: MSMg01no121_p07.b1 PHD_FILE: MSMg01no121_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:55 2005CHROMAT_FILE: MSMg01no121_p07.g1 PHD_FILE: MSMg01no121_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT
AAATCTTGGAAGATTGAAGTTAACCTGACCTTATATGAAACCCTGTCGAA
AGAAAAAAAGAGAAAGGAAGGAAGGAAGAAGGGAAGGGGGAAAGGTGTAC
AATTTTTTATAGGCCTGCGAAAAACAATCATTCAACAATCTCACACCACA
AAATGTCGCTTATATATTCGTCGTCGCTCAACAGTATTCATCCTGTAGCT
TCCCTATCCGTGAATAGATTATGTATATCTCATGTCCCCAATATCGCCGC
CGAATTTTTCCATATACGCACCCCTATTTTTTTTTTTTTCTACAATATTT
CCCCACAAAAAAAAACAAAGATTTTTTTTTTCTTCCACCCCCCCCCCGGC
CGGTATGTTTTCCCGTTTTCAATCGCATCGTAATTCAATCGGGGCAAATA
AAAGCTTATATTTGTAATTGGGGATACGGTCCGCCCACCCTACCTTCGGT
GTGATGACCCCCCTCACGTAAACGAACTAAGAAGTACACTTATTGAGTCG
ACCGAAGAGGAGAGCGTGTAAATTTCAACAGCGTGAGTCGAAATCCCCGA
TAACATGACATAATATATTATGAAAATCGCATATGAATTGTTGCTACCTC
AGACACTCCATCACTTTTTTTCTATATTCTGCATACCCGCCGCTGTGCCC
CCCCCCGCCACATTTTTTTTACCTATTTTATACTTACGACTGAAGTGCTT
CGAAGCGGCCTCTTCTAATATACTTTTGTGTTATATGTA
GTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGTTGCAGTGCAGACTGGTTCCCACTTACTTCTG
ATCTGTGACTACAATGCTTAACAGGCTCAGAAGCACATCCAACCATGTGC
TGCATCAAAGAAATGGTTCTATTAGTCTTAAGTATCTCTTTTTTAATGAT
TTATTTACTTACTGTTATTTTTATGAGCACTGTGTTTTGCCTGCATGTAA
GTCTGTGTGAGGATATTAAGCCCCTAAATATGGAGTTATATACAGACAGT
TGTGAGCTGCCATGTAGGTGCTGGGACTTGAACCTGGGTCCTCTATAAGA
TTATTTGTTGCTTGCCCCTCCTGAGTCCCAGTTTTAAGAATCTTAAGAAC
ATTTTTTTTAAAGTGCCAAGTTACAAATATTAAACATAGGTGGTGGCTCA
AAAAAAAAAAAATGACCCACAGTATAAACTCCAGAGGATATTTTTAAGTA
TGCTTAGGAAACACCAGCCATGACAACTTTGTGTGTTTTCTTGCCTGATG
GGCTTGAGATGGAACCACAATTTGGATTCACTATTCCAAAGTTCATGGTA
TTAAAGGTCAAACACCTGGCAGCCATGGTGCACTGTGCTTGCCCAGAAAG
CCCACCTTCCTGAGTCTCAAGTAGAGGATTATCAGTTACCTACACCCTCT
AT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_p07.g1 MSMg01no121_p07.g1 CHROMAT_FILE:
MSMg01no121_p07.g1 PHD_FILE: MSMg01no121_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:55 2005
         (284 letters)



>mm_chr17_45538532_45539215
          Length = 684

 Score =  511 bits (264), Expect = e-149
 Identities = 273/276 (98%)
 Strand = Plus / Plus

                                                                       
Query: 9   tgcagactggttcccacttacttctgatctgtgactacaatgcttaacaggctcagaagc 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tgcagactggttcccacttacttctgatctgtgactacaatgcttaacaggctcagaagc 268

                                                                       
Query: 69  acatccaaccatgtgctgcatcaaagaaatggttctattagtcttaagtatctctttttt 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 acatccaaccatgtgctgcatcaaagaaatggttctattagtcttaagtatctctttttt 328

                                                                       
Query: 129 aatgatttatttacttactgttatttttatgagcactgtgttttgcctgcatgtaagtct 188
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aatgatttatttatttactgttatttttatgagcactgtgttttgcctgcatgtaagtct 388

                                                                       
Query: 189 gtgtgaggatattaagcccctaaatatggagttatatacagacagttgtgagctgccatg 248
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 389 gtgtgaggatattaagcccctaaaaatggagttatatacagacagttgtgagctgccatg 448

                                               
Query: 249 taggtgctgggacttgaacctgggtcctctataaga 284
           |||||||||| |||||||||||||||||||||||||
Sbjct: 449 taggtgctggaacttgaacctgggtcctctataaga 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)