BAC Information

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BAC

Clone NameMSMg01-122A22
Chromosome17 (Build37)
Map Location 93,200,813 - 93,201,602
singlet/doubletsinglet
Overlap genenone
Upstream geneEG640442, LOC627395, LOC676141, LOC668877
Downstream geneLOC100043746, LOC100043747, LOC100043748, LOC100043907, Adcyap1, LOC676157, LOC627503
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122A22.T7 (MSMg01no122_a22.b1)MSMg01-122A22.TJ (MSMg01no122_a22.g1)
ACCAG332016AG332017
length1,0291,043
length of high quality
(start - end)		782 (87 - 868)763 (83 - 845)
definitionCHROMAT_FILE: MSMg01no122_a22.b1 PHD_FILE: MSMg01no122_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:05 2005CHROMAT_FILE: MSMg01no122_a22.g1 PHD_FILE: MSMg01no122_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGTTTATTNNNNAATCAGTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTCACACAGCAAGTTCCATTTCACTCAATAGATTTGGTT
TTGCCTTATGTTAGTACTGTCTACTTTTCTTATAATTAAAACATTCCATC
TCCATGTTACAAAAGGAAAGAAATTAGAAATAATTGGTTCTTTCTTATAT
AGATGATATTCTACATTTCACCAGTTTTTAAAATATTGAAATTAAACTTA
ATGTTGACAGGGTAAGATCAGAGGGCCAATAGTGTTGTTGATACCTGGCT
AATTTTGTTCAAGTTTATCTGTGTTACTAGACACATTGAGTCTTTCTTTT
AAAAGAGGATTGCATAAAATTACTTCACACCAACTAGATTTAACATAGTA
AATATTAAATGAGAATATGTGGTCTGAAAAAAATGAAATTCTGAGTTTAT
ATATCGATTTTTGTAGGTTAATGAAATTTTACACCAAGTTCTTGCAAAAT
AGCATTAAACTGTAAAGACACCTGATGCCCTAATATTACTCACTTCAAGT
GCTTCCTCTGAAAAGCAAAATCCCTCAGTCTCTAATGATTGAAGGTGAGC
AAATACGCTACTCACATTATTGTTTTTTGTTTTGTTTTGTCTAGGGCTTG
TCTTGTCTTGATTAAATTCTTAAAAAATATATATCTTTTCTTCTAGCATC
ACACTCTAAAGGCAAGGTGTGCACTTATCATTATGTATCCTTTTATTGAA
AAAATAACAACCCTTACAAGGCATATGACCCAATTTGTGTCACTTTCTGA
AAAAGCAGCAATTATTGTGTACTACTATCATTTGTTATTGATGACCAAGT
AGACATAAAGACAGCAGTATAGCCCCTAGTTTGTTACACATGACTAAAAC
ATCAGGTACAATTAGCTTTTGATTATATTGAAGATTATTTTGTGGCTACC
GTTAAAATAATTTTCTAATTAAATAAAAATTTAATCACTGGCTTCCCTTC
ATTTTTCCCTCCCCTCCAGAATCTTTCCC

NNCGAATTTTTNNNNAAAGATGCGAGCCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCCTGTTAAATTAAT
GTTTTCATGATAATGACATATAGCATGAGTCCAGGAGATGAAGGTTTGTC
TATGTCTTCAGCAAAAATGGTAAACTATGAGACCTTCCCGACAGCCCTAA
GGGTATTAAATAACTGTGAAAACATGAGTTTAAAAATATATAATTTCTCA
AGTATACAAAATATAGGGAAGAAATTTGAATTGTATAAGGATTTTCACAG
AAAATTTTAAAAGGAGAGAGGCAGCTGCACTATGAGCCAACTTGTTAGAA
AGATACTAAGAAAGGAGACAAACAGATTTTAGGGAGCAGTGATCACAGGG
CAAGTTTCCACCCAGCTAGATTACTGTCTCTGCTTAACAAAGGCAGACAG
ATCTCTGAATTTGTTTGCAATATATATGTATATATATAAAGTCCTTCTGT
TTCTTTCAAGAATCAGAGATCTGAAGTCATAAGATGCTGATTCATAAGAA
AAGTAACAAAGTTCTTCAAAGACATAAAAAGAGCAATTCTCAAATTCATC
TGGAAAGATAACACCTTTTTGGTTTTTTGTTTGTTTGTTTGTTTTTGTTT
TTTCTGGTTTTTTGAGACAGAGTTTCTCTGTATAGCCCTGGCTGTCCTGG
AACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCAGCCT
CTGCCTCTCTAGTGCTGGGATTAAAGACATGCACCACCACGGCCCGGCAA
TTTTTTATCTTTTGTTGTTAGTATCTAGTGAGTTATAGGACAGATACAGC
AGTTAGAAGTCATTGATATGTTTAGAAGATTCATTTTTATTGTTATTGTT
TTCTTTTAATATTTTGAGACAGGGTCTGACCAGAAACCTGAAGGTTTCTG
GAAATACCCTATGTAAAAAAAAGCCTGAACTTTAAATTTCCCAGAAGACC
CATCTTTGCCCCCCTAATTTCCCTTAAGGGGCTCAAACTTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_a22.b1 MSMg01no122_a22.b1 CHROMAT_FILE:
MSMg01no122_a22.b1 PHD_FILE: MSMg01no122_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:05 2005
         (782 letters)



>mm_chr17_93200613_93201802
          Length = 1190

 Score = 1324 bits (685), Expect = 0.0
 Identities = 762/791 (96%), Gaps = 10/791 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatagatttggttttgccttat-gttag-tactgtctacttttcttataattaaaacat 58
           |||||||||||||||||||| || ||||| || |||||||||||||||||||||||||||
Sbjct: 201 caatagatttggttttgcct-attgttagataatgtctacttttcttataattaaaacat 259

                                                                       
Query: 59  tccatctccatgttacaaaaggaaagaaattagaaataattggttctttcttatatagat 118
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tccatctccatgttacgaaaggaaagaaattagaaataattggttctttcttatatagat 319

                                                                       
Query: 119 gatattctacatttcaccagtttttaaaatattg------aaattaaacttaatgttgac 172
           ||||||||||| ||||||||||||||||||||||      ||||||||||||||||||||
Sbjct: 320 gatattctacacttcaccagtttttaaaatattggggaaaaaattaaacttaatgttgac 379

                                                                       
Query: 173 agggtaagatcagagggccaatagtgttgttgatacctggctaattttgttcaagtttat 232
           |||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 380 agggtaaggtcagagggccaatagtgttgtagatacctggttaattttgttcaagtttat 439

                                                                       
Query: 233 ctgtgttactagacacattgagtctttcttttaaaagaggattgcataaaattacttcac 292
           |||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 440 ctgtgttactagacacatcgagtctttcttttaaaaaaggattacataaaattacttcac 499

                                                                       
Query: 293 accaactagatttaacatagtaaatattaaatgagaatatgtggtctgaaaaaaatgaaa 352
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 500 accaactagatttaacatagtaaatattaaatgagaatgtgtggtctgaaaaaaatgaaa 559

                                                                       
Query: 353 ttctgagtttatatatcgatttttgtaggttaatgaaattttacaccaagttcttgcaaa 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttctgagtttatatatcgatttttgtaggttaatgaaattttacaccaagttcttgcaaa 619

                                                                       
Query: 413 atagcattaaactgtaaagacacctgatgccctaatattactcacttcaagtgcttcctc 472
           |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 620 atagcattaaactgaaaagacacctgatgccctaatattactcactccaagtgcttcctc 679

                                                                       
Query: 473 tgaaaagcaaaatccctcagtctctaatgattgaaggtgagcaaatacgctactcacatt 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgaaaagcaaaatccctcagtctctaatgattgaaggtgagcaaatacgctactcacatt 739

                                                                       
Query: 533 attgttttttgttttgttttgtctagggcttgtcttgtcttgattaaattcttaaaaa-a 591
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 740 attgttttttgttttgttttgtctagggcttgtcttgtcttgattaaattcttaaatata 799

                                                                       
Query: 592 tatatatcttttcttctagcatcacactctaaaggcaaggtgtgcacttatcattatgta 651
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tatatatcttttcttctagcatcacactctaaaggcaaggtgtgcacttatcattatgta 859

                                                                       
Query: 652 tccttttattgaaaaaataacaacccttacaaggcatatgacccaatttgtgtcactttc 711
           ||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 860 tccttgtattgaaaaaataacaacccttacaagacatataacccaatttgtgtcactttc 919

                                                                       
Query: 712 tgaaaaagcagcaattattgtgtactactatcatttgttattgatgaccaagtagacata 771
           ||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||
Sbjct: 920 tgaaaaagcagcaattattatgcactactatcatttgttattgatgaccaagtagagata 979

                      
Query: 772 aagacagcagt 782
           |||||||||||
Sbjct: 980 aagacagcagt 990


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 782
Length of database: 1190
Length adjustment: 10
Effective length of query: 772
Effective length of database: 1180
Effective search space:   910960
Effective search space used:   910960
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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